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Hi all,
Trying to get open the *.zip file to install a Windows VM to run
FreeSurfer. I need a passcode to extract the contents of the Ubuntu VM.
Anyone know what that is?
Thanks!
David
**
David Bjånes, Ph.D.
Neilsen Found
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Request for the pass code for FS_7_2_0_Ubuntu_18_04_06.ova.7z
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When you use --regheader, you should pass the name of the subject (not
a volume); use whatever you passed to recon-all with the -s option. The
output needs to be a volume (eg --o path/lh.something.mgz)
On 7/11/2022 4:00 PM, Rachel Wagner wrote:
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Please d
Pick a hemisphere (either lh or rh). Also, you should verify that your
volume overlays on fsaverage correctly with something like
tkmeditfv fsaverage orig.mgz -surfs -fminmax .01 1 -ov
rReslice_Combined_roi_meanRD.nii -reg
$FREESURFER_HOME/average/mni152.register.dat
On 7/11/2022 6:23 PM, R
There is not a sulcal CSF measure in the aseg. You can run samseg --i
orig.mgz --o samseg to get a measure of the sulcal CSF (in the "CSF"
segmentation)
On 7/12/2022 4:57 AM, Michele GRASSO wrote:
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Hello FreeSurfer Developers,
My name is Michele Grasso a
There is not a way to do this automatically as part of recon-all. You
would need to build a new gca by labeling a set of subjects then
building the gca with gcatrain.
On 7/12/2022 1:00 PM, Ramtilak Gattu wrote:
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Hello all,
We built a CC mask with 3 segmen
You can use the per-vertex regressor (--pvr) in mri_glmfit. There is
currently no way to correct this for multiple comparisons though.
On 7/13/2022 10:53 AM, Silva Rudberg, Jason wrote:
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Hello Freesurfers,
I am trying to conduct a vertex-wise comparison of
Why don't you post to the FSL list?
On 7/13/2022 4:19 PM, Arman Avesta wrote:
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Hi gang,
I want to use fslreorient2std to reorient my NIfTI files in the
standard MNI format. I tried:
fslreorient2std T1.mgz
fslreorient2std -file T1.mgz
fslreorient2std --fi
You have to tell it to do something, eg, add -all to the command line
On 7/13/2022 11:53 PM, Zixuan Lin wrote:
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Hello!
I am trying to run recon-all but it only converted the original image
to .mgz and finished without error. I checked all other folders and
What was your mri_vol2surf command?
On 7/14/2022 4:59 AM, Alberto Del Cerro Leon wrote:
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Hello Freesurfer Team, I am trying to use a ROI to create a label into
fsaverage. Once I registered my ROI to the fsaverage space I performed
a mri_vol2surf and mri_co
The scout is a short, low resolution scan used by the scanner operator
to set the field of view for later scans; it is not use ful.
The SpinEcho looks like it is part of a functional or diffusion sequence
to perform B0 distortion correction (so not used in the anatomical analysis)
I don't know
The contrast will test for the difference in slope of thickness vs
NPIDSEV effect between AD and MCI or AD and CN. if it is positive, it
means that AD has a greater slope than MCI or CN. Note that this does
not make a statement about the sign of the slopes so you can get a
positive result when
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Hello !
I want to build a parcellation(for example,lh.**.gcs) used on monkey brains.I
used mris_sample_parc to sample individual atlas onto its pial surface,then
used mris_ca_train to get a gcs out of eight subjects. Then, I used
mris_ca_label to ap
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