Hi Asa,
Give a try of mris_register -
https://surfer.nmr.mgh.harvard.edu/fswiki/mris_register
Here is the syntax:
mris_register [options]
All three parameters should take full path to your files. Combining the
information I got from surfreg script, is
?h.reg.template.tif from
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Hi Yujing, thanks for your response
Yes my subject directory is /tmp/HCP. But I cannot modify it, so I’d like to
reference and use the fsaverage_sym template which is located outside of the
subjects directory. Is this possible?
If not then I’ll
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Hello,I have questions regarding the along-tract stats using mri_glmfit and
mri_glmfit-sim with permutation for version 7.2.1) I ran it and I found a
significant result (see attached summary file) where I expected/found a
negative association
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Dear Freesurfer developers,
Hi, this message may have slipped through the cracks, hope someone can help us
out on this.
We're looking for the T1 image that goes along with (i.e. in same space, or at
least in same participants) as the
Would it be possible to send us the full crash report? You can find it in the
Console app.
Best,
Ruopeng
On Feb 8, 2023, at 1:48 PM, Rankin McGugin
mailto:rankin.mcgu...@gmail.com>> wrote:
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Here is my error log:
Last login: Wed Feb 8 12:03:23 on ttys000
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Here is my error log:
Last login: Wed Feb 8 12:03:23 on ttys000
Rankins-MacBook-Pro:~ rankinmcgugin$ export
FREESURFER_HOME=/Applications/freesurfer/7.3.2
Rankins-MacBook-Pro:~ rankinmcgugin$ source
$FREESURFER_HOME/SetUpFreeSurfer.sh
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Hello,
I am a longtime FS user. I have read threads on this topic but no
suggestions work in my case. I have the license file in place. I removed
my previous version of FS and have updated to 7.3.2. However, now when I
try to start Freeview, I get
I think you can try to use mris_register directly.
https://surfer.nmr.mgh.harvard.edu/fswiki/mris_register
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Huang, Yujing
Sent: Wednesday, February 8, 2023 11:05 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Directory
Hi
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Could you please send me the password for the developer account of Ubuntu
Freesurfer VirtualBox?
Thank you,
Don
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Hi Asa,
I'm wondering if your SUBJECTS_DIR is /tmp/HCP?
It looks like surfreg checks if target is 'fsaverage_sym'. Can you try passing
just 'fsaverage_sym'?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Asa Borzabadi Farahani
Sent: Wednesday, February 8, 2023 10:38
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Hi there experts!
I’m hoping to use the surfreg function on some data in which I can’t make any
modifications to the subject directory (I’m using a cluster and the data is for
public use thus prohibits any changes to it).
I want to use the
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