See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis
On 10/17/2023 11:55 AM, Alberto Del Cerro Leon wrote:
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Good morning, I would be interested in observing regional differences
in cortical thickness without using predefined regions. Howe
I'm not sure what you mean. Can you elaborate?
On 10/17/2023 5:36 PM, Daniel Gutstein wrote:
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Is there a methodology in FreeSurfer for creating atrophy maps and
displaying them on individual coronal slices?
Thank you.
*Daniel Gutstein*
Research Data Anal
Hi Peter,
I would suggest not to use ‘-parallel’. It is handled by recon-all to run
multiple commands in parallel. It can run into collisions if they are not
synchronized.
These recon-all options ‘-threads <>’, ‘-openmp <>’, ‘-nthreads <>’ tell
individual program to split the tasks and run the
The UNI scan will likely fail for the talairach. One thing you can try
is -samseg-reg, which will compute the tal reg using samseg (which will
be much more robust). However, it wont surprise me to see it fail
somewhere else along the stream.
On 10/18/2023 8:57 AM, Hensenne, Eva (Stud. FHML) wr
Hi Corinna, the two files should give the same vol2vol output. Can you
send your command lines and pics of how they are different? The fscale
was only used by the old tkregister program to control the brightness.
doug
On 10/18/2023 1:44 PM, Corinna Bauer wrote:
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I'm not sure what happened. Have you checked the surface-based
registration? Also check the talairach reg.
On 10/19/2023 11:35 AM, Antonín Škoch wrote:
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Dear experts,
I have encountered an failure of
mri_cvs_register --mov my_subject --mni
The resulting
fsxvfb is just a script that sets up an env for running Xvfb. I wrote
this script and got it working, but I'm not an expert on Xvfb, so you'll
have to figure it out yourself. You can try to running another program
that brings up an image (eg, fsxvfb glxgears) to make sure it is not a
freeview t
This usually means that you edited a recon, then reran recon-all but
only partially leaving the surfaces out of sync.
On 10/25/2023 11:40 AM, Huang, Yujing wrote:
Hi Nicole,
The error message indicated the number of vertices or the number of
triangles don’t match in the two surface files it
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Thank you for your reply!
Best regards,
Peter
On Wed, Nov 8, 2023 at 2:41 PM Huang, Yujing
wrote:
> Hi Peter,
>
>
>
> I would suggest not to use ‘-parallel’. It is handled by recon-all to run
> multiple commands in parallel. It can run into collisi
Dear Victor,
Thanks for letting us know. We’ll look into this ASAP.
Cheers,
/E
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Zeng, Victor (BIDMC -
Keshavan - Psychiatry)
Date: Wednesday, November 8, 2023 at 00:37
To: freesurfer@n
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Hi FreeSurfers,
I have successfully run trac-all -prep, -bedp, and -path on all of my files.
However on two of my files when i ran trac-all -stat -c
/Users/corpuscallosum/Desktop/TRACULA/RRD/R007A/R007A.txt and trac-all -stat
-c on /Users/corpusca
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