15, 2013 at 8:12 PM, Douglas N Greve
gr...@nmr.mgh.harvard.eduwrote:
Hi Bianca, I still don't understand how you have the anatomical from the
polar session but you don't have the inflated. What does that mean?
doug
On 07/14/2013 09:52 AM, Bianca van Kemenade wrote:
Dear Doug Bruce,
It's
put your eccen and polar data into a single bold folder under
your session folder.
Then run preproc-sess.
I'm not sure how this overlaps with what you have done
doug
On 07/11/2013 05:10 AM, Bianca van Kemenade wrote:
Well the situation is as follows:
I had a polar angle session
as
part of preproc-sess. The results for both sessions are on the surface,
so there is no need to do anything to a label created from one session
to show it on another session.
doug
On 07/10/2013 11:55 AM, Bianca van Kemenade wrote:
Hi Bruce,
Thank you for your reply. I coregistered
of the regular stream.
doug
On 07/10/2013 10:58 AM, Bianca van Kemenade wrote:
Dear Freesurfers,
When I only had 3 runs of polar angle data for retinotopic mapping, I
used for example this command to make the analysis:
mkanalysis-sess -a rtopy.self.lh -surface self lh -TR 2 -retinotopy
angle mapping and 3 runs of
eccentricity mapping, with different parameters (cycle duration differs).
Is it possible to analyse polar angle and eccentricity in one go? If so,
what do I put under the -retinotopy flag?
Thanks,
Bianca
--
Bianca van Kemenade, MSc
Doctoral Candidate, Berlin School
Bruce
On Wed, 10 Jul 2013, Bianca van Kemenade wrote:
Hi Bruce,
Thank you for your reply. I coregistered the new data beforehand in SPM
(to the structural of the old session). So I didn't do
anything to the label. I displayed the structural with tksurfer-sess -c
eccen -fthresh 0.5
image,
but I didn't manage to figure it out so I decided to take this longer
route. Anyway it seems to run well now!
Best,
Bianca
On Mon, Jun 24, 2013 at 11:36 AM, Bianca van Kemenade
biancavankemen...@gmail.com wrote:
Sorry for the delay. I'm new to FSL, Freesurfer, and VB, so maybe I'm
PM, Douglas Greve gr...@nmr.mgh.harvard.eduwrote:
Can you run FSL at all in your VB?
On 6/21/13 7:49 AM, Bianca van Kemenade wrote:
Dear Freesurfers,
I'm setting up freesurfer to do retinotopic mapping. I use a PC with
Windows XP, so I installed Freesurfer using the VirtualBox
Dear Freesurfers,
I'm setting up freesurfer to do retinotopic mapping. I use a PC with
Windows XP, so I installed Freesurfer using the VirtualBox (with Xubuntu).
I managed to get through the initial steps for retinotopic mapping, but I
get stuck at the actual analysis.
The point where I get
