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Dear freesurfer team,
in freeview, setting surface edgecolor in axial/saggital/coronal slices to the
overlay color seems to have stopped working between 7.1.1 and 7.2.0 (and up
until 7.3.2). This might have been fixed in the development version
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> Can you send the recon-all.log file?
Here you go, two examples.
Thank you!
Best
Cornelius
subject2_C.DWNR99A_MP2_recon-all.log
Description: subject2_C.DWNR99A_MP2_recon-all.log
subject1_C.AOVO99A_MP2_recon-all.log
Description:
: 'freesurfer@nmr.mgh.harvard.edu'
Cc: Dr. Cornelius Kronlage
Betreff: AW: mri_normalize error MP2RAGE
Hi Cornelius,
this doesn't address your issue directly and I may have simply been lucky,
however, I haven't had any difficulties to process (7T) MP2RAGE data after
background removal suggested by Marques e
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Dear freesurfer experts,
when running recon-all (FS version 7.2.0) on skullstripped 3T MP2RAGE
sequences, about 10-20% of scans from one scanner fail because of this:
mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz
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Dear freesurfer community,
when trying to obtain lobe labels for fsaverage_sym, mri_annotation2label
segfaults - see terminal output below. It works smoothly for fsaverage and any
other subjects. Is there any workaround?
>mri_annotation2label
slope for each class, which can't be done when the class has only one
> member. Try using DOSS instead. You should probably demean and rescale
> the eTIV to be between 0 and 1.
>
> On 6/29/2021 11:19 AM, Dr. Cornelius Kronlage wrote:
> >
> > E
f fsgdf.cpp?
Cheers,
Cornelius
Date: Tue, 29 Jun 2021 15:19:20 +
From: "Dr. Cornelius Kronlage"
Subject: [Freesurfer] mri_glmfit DOSS
To: "'freesurfer@nmr.mgh.harvard.edu'"
Message-ID: <2a173629cd4540769ec6a07d892ca...@med.uni-tuebingen.de&g
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Dear freesurfers,
for a morphometry study, I am comparing a single subject at a time to a group
of controls. I would like to include age, gender (as a continuous variable for
the sake of simplicity) and eTIV as "nuisance" regressors in the GLM.
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Dear freesurfers,
is there an elegant way of computing the intersection or overlap of different
labels or - which would be even more useful for my application - annotations?
I only managed to find labels_intersect (which appears to be from
