Dear freesurfer experts,
I'm curious to understand the meaning of negative indices in flatten
surfaces.
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The information in this
Hi guys,
I've got a list of fiducials (fcsv) from 3DSlicer, Is there a way to
import them within freeview? Those points look like
label,x,y,z,[flag],[flag]
i.e.
P,57.799,-49.1799,13.07,1,1
P,-4.05607,-47.1519,8.93645,1,1
thank in advance.
g.
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Dear freesurfer experts,
I've surfed the web looking for some example on how to visualize the
flattened surface using matlab, but none has appeared so far.
Does this task have been already addressed by someone?
Cheers,
--
Gabriele Arnulfo
PhD Student
Bioengineering
Department of Systemistic
in order to easily
navigate through the brain volume and find the expected contact without
inserting the ras coordinate to a cursor position.
Is there a smart way to do this?
Thank in advance,
--
Gabriele Arnulfo
PhD Student
Bioengineering
Department of Systemistic, Telematic and Informatic
.
On Thu, 5 May 2011, Gabriele Arnulfo wrote:
Sorry here it is.
I need to find the nearest vertex through a script since the contacts
are 150 in average for each patients and any manual computation is
really too long to be done. Indeed the tkmedit gives a more correct
answer than
Dear freesurfer experts,
I was wondering if there's an easy way to visualize contacts of
intra-cerebral electrodes within tkmedit.
Here's the scene: I've got a volume,
which contains a white cross for each contacts on some linear
intra-cerebral electrodes. This volume is in nifti
Hi list,
I've got to questions:
1) mesh_vertex_nearest matlab script takes the vertices from a surface a
matrix of points in 3D Cartesian coordinates system. Is it correct if I
choose points in the Scanner RAS Space as input for this script? I cannot
figure out by the description of the tool.
Hi again,
looking in previous emails in the list i found that the best way to find the
nearest vertex number to a certain point is by using the matlab script
mesh_vertex_nearest. So far I've used it with input parameters: the vertices
read through read_surf(rh_pial) and a matrix of Cartesian
,
what are you trying to accomplish? The right choice depends on your
goals.
cheers
Bruce
On Tue, 25 Jan 2011, Gabriele Arnulfo wrote:
Hi again,
looking in previous emails in the list i found that the best way to find
the
nearest vertex number to a certain point is by using the matlab
coords. Any
idea how deep the electrodes are? The white might be best as it will
minimize the chances of erroneously assigning the electrode to the wrong
bank of a sulcus.
cheers
Bruce
On Tue, 25 Jan 2011, Gabriele Arnulfo wrote:
Hi Bruce,
I've a list of intra cerebral electrodes channel
.mgz and the DICOM share the same space.
doug
On 1/21/11 9:08 AM, Gabriele Arnulfo wrote:
Hi all,
MRI, in this context, i was considering the original DICOM T1 MRI space
before the conversion to 001.mgz file. Is your suggestion still the right
way to solve my task?
2011/1/20 Douglas N
Hi all,
I'm a new freesurfer user and I've a small question for you all. Which
the faster and reliable way to map a list of points into the freesurfer
geometrical space?
I've already read the pdf/ppt but there's no suggestion in there about
which command should be used (if any). I've read about
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