[Freesurfer] freesurfer version 6 on Debian

External Email - Use Caution Is there a way to install freesurfer6 on Debian? I see only CentOS packages available for freesurfer6. Or, is there a way to build from source on Debian? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard

[Freesurfer] squirrel data sharing format available in beta

External Email - Use Caution The squirrel data sharing format is now available in beta format and we're looking for public comment. The squirrel format is designed to use the minimum number of objects to describe all parts of neuroimaging analysis. From experiments and raw data to

Re: [Freesurfer] Problem running recon-all

bian linux. But > the installer should notify you if it fails and why that is. > > > > On 4/23/24 09:21, Gregory Book (gregory.a.b...@gmail.com) wrote: > > External Email - Use Caution > I recently installed freesurfer 7.4.1 on a Debian 12 system (using the >

Re: [Freesurfer] Problem running recon-all

External Email - Use Caution I also see this error which is sent to stderr: /usr/bin/time: cannot run recon-all: No such file or directory It seems to be something related to the time command (or bash keyword) Is your Freesurfer Environment sourced correctly? Here is the wiki he

Re: [Freesurfer] Problem running recon-all

Tbm2n-MTOjXS2Ej1uEpNgZ9lfvkJzcnj7SR5NRRe89nzPhY3jV3X1RPryu31aaVnBfDV7xeQ-b5WO6aR70li-RGAhVttoiUOo_E_Pj4-motaxaqZfNAhXYFAezM4dVSZlRAPrkwuMJG-Op02Vd54RwqKG-0U9qMFpYXqv7SLkSpIzyjUtjEw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSetupConfiguration_Linux Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Gregory Book Sent: Tu

[Freesurfer] Problem running recon-all

External Email - Use Caution I recently installed freesurfer 7.4.1 on a Debian 12 system (using the Ubuntu 22 .tar.gz). When running recon-all, I get the following error: -bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute: required file not found Paths are all

[Freesurfer] recon-all error

External Email - Use Caution I installed freesurfer 7.4.1 on Debian 12 (using the Ubuntu 22 .tar.gz). Some programs run fine, but some do not. When running recon-all, I get the following error: -bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute: required file no

[Freesurfer] Options to decrease computation time

External Email - Use Caution I'm curious if there are options to decrease computation time, even at the expense of quality? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/frees

[Freesurfer] RA/programmer job posting - neuroinformatics, big data {Disarmed} {Disarmed}

The Olin Neuropsychiatry Research Center (http://nrc-iol.org ) located in Hartford, CT USA is looking for a resear

[Freesurfer] Longitudinal study concept question

In writing a paper of longitudinal changes in a large heterogeneous population with no group comparisons, what would be considered "more important" to include: absolute ROI volumes, or volumes corrected for ICV? Using ICV corrected volumes makes sense when comparing groups, but when just describin

[Freesurfer] Job postings: Post-doc & Data manager/programmer

The Olin Neuropsychiatry Research Center, located in Hartford CT, USA is looking to fill 2 open positions. The Olin Neuropsychiatry Research Center has an opening for a post-doc specializing in neuroinformatics, big-data analysis, and machine learning. The Olin Center is the psychiatric research c

[Freesurfer] Post-doc opening in Neuroinformatics

The Olin Neuropsychiatry Research Center has an opening for a post-doc specializing in neuroinformatics, big-data analysis, and machine learning. The Olin Center is the neuropsychiatric research center within Hartford Hospital’s Institute of Living campus, in Hartford, CT. We house a Siemens Skyra

[Freesurfer] Data manager/programmer position

The Olin Neuropsychiatry Research Center is seeking a data manager/programmer to help maintain neuroimaging databases in support of multiple NIH funded projects. The Olin Center is a neuropsychiatric research center within Hartford Hospital’s Institute of Living campus. We house a 3T MRI, multiple

[Freesurfer] Labeled Nifti atlases

Are there any labeled nifti atlases that correspond to the freesurfer parcellation atlases output from recon-all? I'm basically interested in visualization of group results. -Greg ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr