[Freesurfer] wmparc

Hi all, I am working with FS 4.5 and 5.0 and I have noticed that in wmparc.stats in 5.0 there are volumes (segmentations) that do not appear in the wmparc.stats file (and appear in 4.5 version), for instance the subcortical structures, ventricles, cerebellum. In wmparc V 4.5 I have 1189 rows

[Freesurfer] fMRI-EEG Post-Doc Open Position

Hi all,  there is an open position to fMRI-EEG, http://www.eracareers.pt/ opportunities/index.aspx?task= globaljobId=22187 Best,  Jose   ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Volumes/Areas

Hi all freesurfers, What volume/area should I use to measure the motor cortex? Is there a way to measure the volume/area of medial or ventromedial prefrontal cortex? Thanks for the help, Jose. ___ Freesurfer mailing list

[Freesurfer] medialorbitofrontal_area

normalize the individual areas to the correspondent lh or rh hemisphere? What suggestions do you have? Thanks a lot for all the help, Jose. What's the total surface area of the rh? Is it bigger than the lh? On Fri, 13 Aug 2010, Jose Soares wrote: What is the best way to check the segmentation

[Freesurfer] QDEC

Hi all, I am working with QDEC and I would like to know if it is possible to do subcortical structures (e.g. hippocampus, amygdala, putamen) analyses in qdec?? I only have cortical structures mapped in my analyses. Thanks for the help, Miguel.

[Freesurfer] Qdec white matter

Hi all, I am using qdec and I would like to know if it is possible to do any comparison with whit matter in qdec. Thank you for the help, Miguel. Veja quais são os assuntos do momento no Yahoo! +Buscados

[Freesurfer] Qdec white matter

Thanks Nick, my version is 4.0.3 on a linux 32bit. If you could send me the update I would be grateful. My point is to do a whitte matter comparison between two groups of subjects, with and without a pathology.  I woul like to use white matter as I use cortical thickness (If it is possible),

[Freesurfer] FS versions

Hi all, I am doing a study with FreeSurfer (80 subjetcs till now), and I have cases reconstructed with the versions 4.2 and 4.3. I want to continue the study, and install the 4.5 version. I saw that in this release the Destrieux Atlas was updated. Could i compare the cases from the versions

[Freesurfer] MS lesions

Hi, what kind of information can I get with FreeSUrfer about MS lesions? Number of lesions? Lesion volume? Thanks, Miguel. Veja quais são os assuntos do momento no Yahoo! +Buscados

Re: [Freesurfer] Lesion Quantification

Quantify MS lesions. Thanks, Miguel. Veja quais são os assuntos do momento no Yahoo! +Buscados http://br.maisbuscados.yahoo.com___ Freesurfer mailing list

[Freesurfer] qdec analyses

Hi all, I am a little bit confused about the qdec display. I have some simple questions about two groups A and B: 1- In the question, does the average thickness differ between A and B? How this average is calculated? By the difference between the A average and B average (avgA-avgB) ? The

[Freesurfer] qdec start

Hi all, I am starting with qdec and i have a simple question. I have 30 recon-all subjects but I didn't do the -qcache option.  1- I want to know if I need to run this -qcache option even if I use the fsaverage target subject, or this is only necessary if se my own average subject? 2- Where do