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Hi just following up on the question...
.does anyone have an idea about why the same two parcellations get dropped
when swapping the atlases out and making an aparc+aseg
On Mon, 14 Jan. 2019, 11:17 pm Michael Sughrue Hello
>
> My in
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Hello
My interest is to create an aparc+aseg file with a combination of a
cortical parcellation with a custom cortical atlas and the subcortical grey
matter components from the standard asegbasically i want to mask and
extract signal from multiple
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Recon all takes the vertices and assigns them to a parcel using the gcs
atlases ... these labelings are the annot files and they are used to
generate the autoparcellated pial surfaces
Because there are 3 atlases in the recon all pipeline... three
les you will probably need to fill the
> hole in the wm.mgz to make the topology closer to what we expect it to be.
> For the gliomas it depends on where they are
> cheers
> Bruce
> On
> Tue, 1 Jan 2019, Michael Sughrue wrote:
>
> >
> > External Email
number of times but of course it depends a lot
> on the details of the abnormality so it is hard to give generic advice
>
> cheers
> Bruce
>
> On Fri, 28 Dec 2018, Michael Sughrue
> wrote:
>
> >
> > External Email - Use Caution
> >
> >
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Has anyone had success extracting surfaces of brains with obviously
abnormal surfacespost-surgical or very distorted cortices from tumor
etceven if the extraction is imperfect, is it possible to do with
freesurfer and get something imperfect
