Re: [Freesurfer] License files with FreeSurfer 5.2.0

2017-10-09 Thread Paul Raines
. Can also try running within a CentOS6 or earlier docker container. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Fri, 6 Oct 2017 4:53pm, Mike Schmidt wrote: > I am re-running some old scans on current hardware to do comparisons with > 5.2.0 output from old hardware, 5.2.0 outpu

Re: [Freesurfer] freesurfer tutorial data

2012-09-05 Thread Help Desk -- Paul Raines
Instead of FTP, you could try getting the files via HTTP at http://surfer.nmr.mgh.harvard.edu/ftp/dist/freesurfer/ -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Tue, 4 Sep 2012 6:19pm, Dix Meiberth wrote: Thx for your responses. But no, I try to copy to my harddrive on my 1 year old

Re: [Freesurfer] freesurfer tutorial data

2012-09-04 Thread Help Desk -- Paul Raines
2GB sounds like you reaching maybe a file size limit of your operating system if it is really old. Or if you have are trying to download to a FAT formated external USB drive or such. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Mon, 3 Sep 2012 11:32am, Bruce Fischl wrote: Hi Dix

Re: [Freesurfer] .license file

2012-06-18 Thread Paul Raines
I am assuming you are on a OSX box which has that stupid protection. Just open a Terminal and run cat $FREESURFER_HOME/.license then type in the 3 lines and Enter and then do a Control-D to exit -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Sun, 17 Jun 2012 1:45am, Monica

Re: [Freesurfer] trac-all -bedp terminated job

2012-06-04 Thread Paul Raines
Do not run your jobs on seychelles. Most nodes are still CentOS4 and I think a lot of the tools are simply not going to run on CentOS4 anymore. Run them on launchpad and if you still get errors then we need to investigate. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Mon, 4 Jun 2012 2

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Paul Raines
limit grace files quota limit | homes:/local_mount/homes/011 | 1746M 3907M 3956M 20004 0 0 and I see I am using 1.7GB out of my 4GB home directory quota. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Thu, 10 May 2012 1:47pm, Trietsch

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Paul Raines
on /data so you can write to it as the normal login user using the chown chmod commands. Then 'exit' to get out of the sudo shell. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Thu, 10 May 2012 2:30pm, Trietsch, Rayna wrote: Thank you very much for your help. I am able to see

Re: [Freesurfer] launchpad help

2011-06-21 Thread Paul Raines
--- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA

Re: [Freesurfer] Access to download

2011-06-20 Thread Paul Raines
Yes we had maintenance Should be back online now --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129

Re: [Freesurfer] unable to download data from wiki page

2011-01-08 Thread Paul Raines
We have a system outage this weekend so freesurfer download is unavailable. Try again Sunday -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149

Re: [Freesurfer] ftp server down??

2010-08-24 Thread Paul Raines
/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA

Re: [Freesurfer] Red Hat vs. CentOs

2010-08-09 Thread Paul Raines
. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula

Re: [Freesurfer] DISPLAY error

2010-03-24 Thread Paul Raines
not presenting yesterday (or the day prior). Thanks, Lindsay -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown

Re: [Freesurfer] Graphics Card Question

2009-12-17 Thread Paul Raines
Surfer? I am planning to use these with Ubuntu. Is there anything I should know about before I take the plunge and buy them? Thanks in advance for your help Sam -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu

Re: [Freesurfer] Installation

2009-06-16 Thread Paul Raines
What is the exact tar command line you used? It is a gzipped archive so you have to give tar the 'z' option to uncompress it. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Using tmpfs to speed up recon-all

2009-05-28 Thread Paul Raines
What are you using to maeasure the CPU use? Freesurfer is a single threaded application. If you have a multiple CPU/core box, some CPU monitor programs often show a CPU usage of only '25%' on a 4 core box when a single threaded program is running at full CPU use. On Thu, 28 May 2009,

Re: [Freesurfer] Re: tksurfer display problems vary by OS version

2009-02-27 Thread Help Desk -- Paul Raines
. ... -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] dicom image viewer

2008-09-09 Thread Paul Raines
-- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA ___ Freesurfer mailing list

RE: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Paul Raines
mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging

Re: [Freesurfer] Re: tksurfer display broken

2008-05-29 Thread Paul Raines
___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS

Re: [Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Paul Raines
/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA

RE: [Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Paul Raines
-Original Message- From: Paul Raines [mailto:[EMAIL PROTECTED] Sent: Wed 5/28/2008 10:10 AM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer display broken: smart over-ride? I don't understand why you got a mesa-libGL rpm and are trying

Re: [Freesurfer] tksurfer display broken

2008-05-27 Thread Paul Raines
___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center

Re: [Freesurfer] unpacksdcmdir issue

2008-05-09 Thread Paul Raines
@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th

Re: [Freesurfer] VNC/GLX... what is really vncserver.glx

2008-04-25 Thread Paul Raines
for instances of /usr/pubsw/packages, which point to our installation of VNC. Nick -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street

Re: [Freesurfer] Centos 5 freesurfer GLX GLXBadLargeRequest - Install NVidia driver manually?

2008-04-24 Thread Paul Raines
-7.2.el5.i386.rpm Looks like the current ones are 7.5. SO if the 7.2 ones work, then something was introduced since then. On Thu, 24 Apr 2008, Brian Hanna wrote: Yes, that makes sense. But what libraries can I use to run tksurfer -without- installing the Nvidia libraries? Paul Raines wrote

Re: [Freesurfer] Centos 5 freesurfer GLX GLXBadLargeRequest - Install NVidia driver manually?

2008-04-24 Thread Paul Raines
/lib/GLoverride'; } What is in those libraries - where did they come from? Perhaps this is the approach I need to use - leave the standard distro GL libraries in place, and put the Nvidia libraries into another location for use only by vnc. Thanks, Brian Paul Raines wrote: Wait, you

Re: [Freesurfer] problems

2007-12-14 Thread Paul Raines
://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Raines

Re: [Freesurfer] reading DICOM fields

2007-12-13 Thread Paul Raines
. -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA

RE: [Freesurfer] problem viewing in tksurfer

2007-11-29 Thread Paul Raines
both GLX and SGI-GLX. Does this mean that I still need to install a X11 video driver? Or is it a different problem? Thanks again, sarah From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Wednesday, November 28, 2007 3:26 PM To: Sarah Andersen Cc: 'Paul Raines'; freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] problem viewing in tksurfer

2007-11-28 Thread Paul Raines
PROTECTED] -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA

Re: [Freesurfer] X11/Tkmedit/Tksurfer Issue

2007-11-15 Thread Paul Raines
] -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129USA ___ Freesurfer mailing

RE: [Freesurfer] freesurfer help

2007-10-29 Thread Paul Raines
was checked by NOD32 antivirus system. http://www.eset.com -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA

Re: [Freesurfer] Re: Error: Cannot allocate memory

2007-10-04 Thread Help Desk -- Paul Raines
mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center

Re: [Freesurfer] error while loading shared libraries

2007-07-18 Thread Help Desk -- Paul Raines
installation of FSL, but upon a total uninstall of centos5 and reinstall it still is uncooperative, any help would be really appreciated, thanks Andy -- --- Paul Rainesemail: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula