Re: [Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

Thank you, doug, I will try xfm! On Thu, Mar 7, 2013 at 7:03 PM, Douglas N Greve wrote: > The xform has to be linear in the xfm format. The m3z cannot be used. > doug > > On 03/07/2013 06:44 PM, Xiaowei Song wrote: > > Thanks for your help. > > > > My command li

Re: [Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

Thanks for your help. My command line is make_average_subject --out avgGrp139 --subjects `cat script/subjects.id` --xform talairach.m3z On Thu, Mar 7, 2013 at 6:15 PM, Bruce Fischl wrote: > what was your command line? > > On Thu, 7 Mar 2013, Xiaowei Song wrote: > > Sorry, I

Re: [Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

PM, Bruce Fischl wrote: > sorry, I don't understand. What was the error? I don't see one in this > email. Can you send us the actual screen output? > > cheers > Bruce > > On Thu, 7 Mar 2013, Xiaowei Song wrote: > > This error may come from regio_read_mincxfm funct

Re: [Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

This error may come from regio_read_mincxfm function in registerio.c. Does this mean something wrong in recon-all? I forgot to mention that FreeSurfer version is freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song wrote: > Hi all, > >

[Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

164320_seg-1173622.mgh --interp nearest I found another same question asked before, but no answer. https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/024064.html Any hint or help will be appreciated. Thank you. -- Xiaowei Song ___ Freesurfer ma

Re: [Freesurfer] Help with the error info: mghRead subject/surf/lh.inflated.H, could not open file

at 2:04 PM, Xiaowei Song wrote: > No one ever encountered this kind of full path problem? > recon-all works fine, but recon-all -qcache stopped because of this kind > of problem. > > Any hint would be appreciated. > > Xiaowei > > > On Wed, Feb 20, 2013 at 5:07 PM,

Re: [Freesurfer] Help with the error info: mghRead subject/surf/lh.inflated.H, could not open file

No one ever encountered this kind of full path problem? recon-all works fine, but recon-all -qcache stopped because of this kind of problem. Any hint would be appreciated. Xiaowei On Wed, Feb 20, 2013 at 5:07 PM, Xiaowei Song wrote: > Dear Bruce and freesurfer experts, > > I am tryi

[Freesurfer] Help with the error info: mghRead subject/surf/lh.inflated.H, could not open file

RedHat release: Red Hat Enterprise Linux Server release 6.3 (Santiago) Kernel info: Linux 2.6.32-279.22.1.el6.x86_64 x86_64 Thanks -- Xiaowei Song ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo