Sorry, I did not make it clear. In make_average_volume.log, the error message is:
1/139 1173622 aseg Sat Feb 23 02:26:02 EST 2013 mri_vol2vol --mov /data/lis9/fs/x/1173622/mri/aseg.mgz --targ /usr/local/freesurfer/average/mni305.cor.mgz --xfm /data/lis9/fs/x/1173622/mri/transforms/talairach.m3z --o /data/lis9/fs/x/avgGrp139/tmp/make_average_vol-tmp-55832/seg-1173622.mgh --interp nearest ERROR: /data/lis9/fs/x/1173622/mri/transforms/talairach.m3z does not start as 'MNI Transform File'/spin1/users/lis9/fs/dcm.mprage.mgz ERROR: mri_vol2vol failed. On Thu, Mar 7, 2013 at 5:49 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > sorry, I don't understand. What was the error? I don't see one in this > email. Can you send us the actual screen output? > > cheers > Bruce > > On Thu, 7 Mar 2013, Xiaowei Song wrote: > > This error may come from regio_read_mincxfm function in registerio.c.Does >> this mean something wrong in recon-all? >> >> I forgot to mention that FreeSurfer version is >> freesurfer-Linux-centos4_x86_**64-stable-pub-v5.1.0 >> >> >> On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song <dawnwei.s...@gmail.com> >> wrote: >> Hi all, >> >> Did you encounter the error message talairach.m3z does not start as >> 'MNI Transform File' when making average of subjects? >> >> I checked all the recon-all.log file and did not find error, but when >> running make_average_subject after recon-all, then this error shoot. >> >> To repeat the error message, I tried the following command which is >> called by make_average_subject and found all my subjects shoot this >> error. >> >> mri_vol2vol --mov 1173622/mri/aseg.mgz --targ >> /usr/local/freesurfer/average/**mni305.cor.mgz --xfm >> 1173622/mri/transforms/**talairach.m3z --o >> /tmp/make_average_vol-tmp-**164320_seg-1173622.mgh --interp nearest >> >> I found another same question asked before, but noanswer. >> https://mail.nmr.**mgh.harvard.edu/pipermail//**freesurfer/2012-May/024<https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/024> >> 064.html >> >> Any hint or help will be appreciated. Thank you. >> >> -- >> Xiaowei Song >> >> >> >> >> -- >> Xiaowei Song >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Xiaowei Song
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