Hi everybody,
I installed CentOS 6.6 in a machine without using internet connexion.
Everything is fine. I would like now to install Freesurfer and Tracula
mounting a NTFS partition from an external hard disk. also I note that I
can not copy Freesurfer in a FAT32 partition.
Actually I'm not sure
-- Forwarded message --
From: fatma zribi zribi.fa...@gmail.com
Date: 2013/9/3
Subject: How to smoothing area with mri_surf2surf?
To: Bruce Fischl fis...@nmr.mgh.harvard.edu
Dear Bruce,
Would you mind help me. I would like to smooth area surface with the
command mri_surf2surf
with --srcsubject and --trgsubject
cheers
Bruce
On Mon, 29 Jul 2013, fatma zribi wrote:
mri_surf2surf --hemi lh --s s000_open_brain_sanlm_+TIR_**normlalized
--sval curv --src_type curv --fwhm 10 --trg_type curv --tval
curv.10
2013/7/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
what
Bruce
On Tue, 30 Jul 2013, fatma zribi wrote:
Dear Bruce,
I try to execute this command to smooth and resample data but I have one
message of error:
mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_**normlalized
--srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD
Dear Bruce,
Would you mind tell me if there is a function of freesurfer that I can use
to do the same step of qcache to smooth and interpolate in the fsaverage
one subject
with mri_surf2surf I can smooth only or align one subject with an average.
thank you for you help.
with best regards,
Fatma
Hi Fatma
you can use mri_surf2surf within subject I believe, but Doug can confirm
(although he's traveling so it may be a bit). You can also do it
interactively in tksurfer.
cheers
Bruce
On Mon, 29 Jul 2013, fatma zribi wrote:
Dear Bruce,
Would you mind tell me
Dear Bruce,
Would you mind help me. I have to smooth a sulc data with the command
mri_surf2surf but it don't work. I have triyed with curv data it work very
well
i have put this command :
mri_surf2surf --hemi lh --s s000_open_brain_sanlm_+TIR_normlalized --sval
sulc --src_type sulc --fwhm-trg
Dear Bruce,
Finally the function work well.
Thank you for your help.
With best regards,
Fatma
2013/7/10 fatma zribi zribi.fa...@gmail.com
SURFACE INFO
type: MRIS_TRIANGULAR_SURFACE=MRIS_ICO_SURFACE
num vertices: 143704
num faces : 287404
Dear Bruce,
Now i would like to use the function read_curv but I have a problem of
dimension .. curv is a vector of [143704,1] and vertices must be a matrix
of [3, 143704]
Would you mind help me and send an exemple of the use of the function wiht
the visualisation of the brain
[curv, fnum] =
Dear Bruce,
thank you very much
with best regards,
Fatma
2013/7/11 Bruce Fischl fis...@nmr.mgh.harvard.edu
glad to hear it
Bruce
On Thu, 11 Jul 2013, fatma zribi wrote:
Dear Bruce,
Finally the function work well.
Thank you for your help.
With best regards,
Fatma
2013/7/10 fatma
a scalar field over
the surface, not the surface itself, which is why it is nvertices x 1. Use
read_surf to read the surface topology in
cheers
Bruce
On Thu, 11 Jul 2013, fatma zribi wrote:
Dear Bruce,
Now i would like to use the function read_curv but I have a problem of
dimension .. curv
-- Forwarded message --
From: fatma zribi zribi.fa...@gmail.com
Date: 2013/7/11
Subject: Re: How to use read_curv?
To: Bruce Fischl fis...@nmr.mgh.harvard.edu
i have used read_surf to read ?h.white data. Now i would like to use curv
and sulc file of FreeSurfer and extract
-- Forwarded message --
From: fatma zribi zribi.fa...@gmail.com
Date: 2013/7/10
Subject: Re: [Freesurfer] how to use mris_register?
To: Bruce Fischl fis...@nmr.mgh.harvard.edu
Hi Bruce,
Thank you very much for your help but it still don't work.
mris_register
Hi Bruce,
Yes i can run ls -l in the directory
2013/7/10 Bruce Fischl fis...@nmr.mgh.harvard.edu
Hi Fatma
are you sure you don't have a typo in the path? Can you run ls -l on that
file?
Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
-- Forwarded message --
From: fatma
-- Forwarded message --
From: fatma zribi zribi.fa...@gmail.com
Date: 2013/7/10
Subject: Re: [Freesurfer] Fwd: how to use mris_register?
To: Bruce Fischl fis...@nmr.mgh.harvard.edu
Copie1/s000_open_brain_sanlm_+TIR_normlalized$ ls -l
total 704
drwxrwxr-x 2 zribi.f scalp 4096 Jul
**normlalized/surf/lh.sphere
cheers
Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
-- Forwarded message --
From: fatma zribi zribi.fa...@gmail.com
Date: 2013/7/10
Subject: Re: [Freesurfer] Fwd: how to use mris_register?
To: Bruce Fischl fis...@nmr.mgh.harvard.edu
Copie1
0.874440
avgvtxdist 1.078393
stdvtxdist 0.419625
vtx0xyz 30.075546 -90.141014 -31.145763
2013/7/10 Bruce Fischl fis...@nmr.mgh.harvard.edu
and how about:
mris_info s000_open_brain_sanlm_+TIR_**normlalized/surf/lh.sphere
On Wed, 10 Jul 2013, fatma zribi wrote:
Dear Bruce
Dear Mr,
When I execute mris_register to register one subject to a template., I have
this message of error:
mris_register -1 s000/surf/lh.sphere
avg_all_subjects_SD/lh.reg.template.tif sphere_reg
treating target as a single subject's surface...
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33
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