Hi Bruce, thank you very much it works!
With best regards, Fatma 2013/7/30 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Hi Fatma > > try giving it the full path to the curv file. I think "curv" is the right > format to specify, but I believe it needs the full path to the src and > target > > cheers > Bruce > > On Tue, 30 Jul 2013, fatma zribi wrote: > > Dear Bruce, >> >> I try to execute this command to smooth and resample data but I have one >> message of error: >> >> mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_**normlalized >> --srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD >> --trgsurfval curv --hemi lh --fwhm-src 15 --trg_type smoothed.source.15 >> >> the error is: ERROR: could not determine type of curv >> >> thank you for your help, >> >> With best regards, >> >> Fatma >> >> >> 2013/7/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> can you cc the list so that others can answer or see the answer? >> You need to specify the source and target subjects with >> --srcsubject and --trgsubject >> >> cheers >> Bruce >> >> >> On Mon, 29 Jul 2013, fatma zribi wrote: >> >> mri_surf2surf --hemi lh --s >> s000_open_brain_sanlm_+TIR_**normlalized --sval curv >> --src_type curv --fwhm 10 --trg_type curv --tval >> curv.10 >> >> >> 2013/7/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> what is your full command line? You can smooth >> and map with it (use -fwhm-src or fwhm-trg to smooth >> in either the >> source or target space) >> On Mon, 29 Jul 2013, fatma zribi wrote: >> >> Dear Bruce, >> I have tried mri-surf2surf, it makes the >> result (smoothed curv for example) with the same >> dimension of >> the subject. But I would >> like a smoothed file with the dimesion >> of fsaverage. >> >> Thank you for your help. >> >> With best regards, >> >> Fatma >> >> >> 2013/7/29 Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> >> Hi Fatma >> >> you can use mri_surf2surf within >> subject I believe, but Doug can confirm (although >> he's traveling >> so it may be a >> bit). You can also do it >> interactively in tksurfer. >> >> cheers >> Bruce >> >> >> On Mon, 29 Jul 2013, fatma zribi >> wrote: >> >> Dear Bruce, >> >> Would you mind tell me if >> there is a function of freesurfer that I can use to >> do the same >> step of >> qcache to smooth and >> interpolate in the fsaverage >> one subject >> with mri_surf2surf I can >> smooth only or align one subject with an average. >> thank you for you help. >> with best regards, >> Fatma >> >> >> >> >> The information in this e-mail is >> intended only for the person to whom it is >> addressed. If you believe this e-mail >> was sent to you in error and the e-mail >> contains patient information, please >> contact the Partners Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient >> information, please contact the sender and properly >> dispose of the e-mail. >> >> >> >> >> >> >> >>
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