Dear Freesurfer experts,
I'm trying to run Tracula -prep after sourcing Freesurfer 5.3. The file
subjid/dmri/dwi_motion.txt is not included in the output. I then ran:
trac-all -qa -c dmrirc
and got the error message: flag -qa unrecognized
Do you know what could have gone wrong? Do I have to
Hi all,
We're conducting the registration using bbregister that gives us a
registration matrix (a .dat file) BUT the original structural file remains
intact, i.e. the registered output can be viewed but not stored. Can we
store the co-registered structural image as a .nii file? And if so, how?
We
Dear Freesurfer experts,
After I ran the functional to structural registration using the bbregister
command, it looks like the dorsal part of the brain for this participant
is cut off in the BOLD images. When we ran the scan, we made sure that the
slice prescription covered the entire brain. We
Dear Bruce,
Thank you for your response. I just looked at the f.nii file using fslview
and it looks like the top is cut off.
Trang
what are you visualizing it in? If you just look at it without the
registration does it look ok?
On Thu, 4 Apr 2013,
qtngu...@nmr.mgh.harvard.edu wrote:
Dear
Dear Freesurfer experts,
I'm trying to run structural reconstruction for two subjects DODASD016 and
DODASD017.
DODASD016 was scanned last Wed Oct 10 and last week I was able to
findsession DODASD016, run dcmdir-info-mgh, and run recon-all using
pbsubmit. However, after this was done I was unable
