Hi XJ - In your configuration file, you've set both doregflt and doregbbr
to 0. You have to set one of them to 1, otherwise no intra-subject
registration will be done and every step that relies on it will fail.
a.y
On Fri, 15 Jun 2012, XJ Kang wrote:
> Hi Priti,
>
> I removed the NaNs in the
Hi Priti,
I removed the NaNs in the 4D images and re-ran trac-all -prep. The
warning message is gone (of course) but the error message of
dlable/diff/White-Matter++.flt.nii.gz is still there since no
"White-Matter++.flt.nii.gz" in the diff directory. Only one image in
dlabel/diff/: lowb_brain
Hi Priti,
The 3D data are the averages of two or more sets of DWI data. All the
DWIs were already perform the field map correction by "epidewarp.fsl",
and they were also coregistered to T1 images in spm. So probably I don't
need these two step. I may add the b0 inhomogenity correction.
For the
Hi XJ,
I'm just starting to look at your log files. Just curious, did you decide
to not do eddy current correction and b0 inhomogenity correction or
accidentally left it out?
When I look at the configuration file, you've given all the parameters for
b0 inhomogenity correction, but it is set to '0
