Hello,
We try to look at the two group difference of cortical thickness, but I need
the lh(or rh).thickness file, which reported in template space (FS average
space), but after run recon-all -all, what I have is only lh.thickness, or
rh.thickness, which is in subject's space. Would someone p
Aize,
run:
recon-all -s subjid -qcache -measure thickness
and this will create files in the /surf dir which sample the thickness
data at different smoothing levels onto the fsaverage subject space.
n.
On Wed, 2011-03-09 at 05:46 +0800, caoaize wrote:
>
> Hello,
>
> We try to look at the two
Hello there, We have a bunch of files that had freesurfer run already, simply
using the command "recon-all -s subjid -all", in order to get the cortical
thickness in fs average space, should we have to re-run all of them again using
"recon-all -s subjid -qcache -measure thickness", or we may ap
Hi Aize,
yes, that should do it.
cheers,
Bruce
On Fri, 15 Apr 2011, caoaize wrote:
>
> Hello there, We have a bunch of files that had freesurfer run already, simply
> using the command "recon-all -s subjid -all", in order to get the cortical
> thickness in fs average space, should we have to r
u
> To: caoa...@hotmail.com
> CC: ni...@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Cortical thickness in the template space
>
> Hi Aize,
>
> yes, that should do it.
>
> cheers,
> Bruce
> On Fri, 15 Apr 2011, caoaize wrote:
>
ay
> you or somebody else give me some help? Thanks.
> Aize
>
>> Date: Fri, 15 Apr 2011 10:47:08 -0400
>> From: fis...@nmr.mgh.harvard.edu
>> To: caoa...@hotmail.com
>> CC: ni...@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer
