[Freesurfer] DTI group analysis

2010-03-22 Thread Ryan
Hello all, In trying to perform a group analysis on volumetric and DTI data (with test4d.nii.gz file created by fslmerge), I encounter an error. Any help is greatly appreciated. Also, can anyone tell me what programs they prefer to use for DTI group analysis? It seems QDEC isn't helpful if you n

[Freesurfer] DTI group analysis

2010-03-22 Thread Ryan
Hello all, In trying to perform a group analysis on volumetric and DTI data (with test4d.nii.gz file created by fslmerge), I encounter an error. Any help is greatly appreciated. Also, can anyone tell me what programs they prefer to use for DTI group analysis? It seems QDEC isn't helpful if you ne

[Freesurfer] DTI Group Analysis Study

2011-11-11 Thread Antonella Kis
Hi, I am trying to do a DTI Group Analysis study using a MNI152 standard space for registration. 1). I wonder in case I want to use MNI 152 and not CVS space using TRACULA if I have to follow all the steps     starting Setting Up a Configuration File to run Tracula and then to  continue

[Freesurfer] DTI Group Analysis Study

2011-11-14 Thread Antonella Kis
results from FSl with th eone from Freesurfer: TRACULA or dt_recon method. Please advise. Many thanks, Antonella From: Anastasia Yendiki To: Antonella Kis Cc: "freesurfer@nmr.mgh.harvard.edu" Sent: Friday, November 11, 2011 4:45 PM Subject: Re: [Frees

Re: [Freesurfer] DTI Group Analysis Study

2011-11-11 Thread Anastasia Yendiki
1. Currently trac-all uses only the MNI template, not CVS. So yes, all steps apply. 2. See the tracula tutorial, section "outputs from tracula", to see where to find the MNI-space outputs. 3. What clusters are you talking about? Do you want to do a voxel-based analysis? If so, why are

Re: [Freesurfer] DTI Group Analysis Study

2011-11-14 Thread Antonella Kis
results from FSl with th eone from Freesurfer: TRACULA or dt_recon method. Please advise. Many thanks, Antonella From: Anastasia Yendiki To: Antonella Kis Cc: "freesurfer@nmr.mgh.harvard.edu" Sent: Friday, November 11, 2011 4:45 PM Subject: Re: [Frees