Re: [Freesurfer] Fwd: Fwd: Eccentric lesions

2014-11-27 Thread Octavian Lie
I tried, here is the command: mris_make_surfaces -cover_seg mri/aseg.mgz subjid lh and the last 5 lines of the run: ... smoothing surface for 5 iterations... repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 creating distance transform volume from segmen

Re: [Freesurfer] Fwd: Fwd: Eccentric lesions

2014-11-27 Thread Bruce Fischl
Hi Octavian You should try it and see. It's hard to predict how it will do Cheers Bruce > On Nov 26, 2014, at 4:43 PM, Lilla Zollei wrote: > > > Hi, Could you use a colormap for your aseg? It is really hard to see the > different ROIs on a grayscale image. > Thanks, Lilla > >> On Wed, 26 No

Re: [Freesurfer] Fwd: Fwd: Eccentric lesions

2014-11-26 Thread Lilla Zollei
Hi, Could you use a colormap for your aseg? It is really hard to see the different ROIs on a grayscale image. Thanks, Lilla On Wed, 26 Nov 2014, Octavian Lie wrote: Dear Lilla, Here is a snapshot of the aseg volume, which rescues some gray matter not included in the pia. I am not sure if t