Hi Octavian You should try it and see. It's hard to predict how it will do Cheers Bruce
> On Nov 26, 2014, at 4:43 PM, Lilla Zollei <lzol...@nmr.mgh.harvard.edu> wrote: > > > Hi, Could you use a colormap for your aseg? It is really hard to see the > different ROIs on a grayscale image. > Thanks, Lilla > >> On Wed, 26 Nov 2014, Octavian Lie wrote: >> >> Dear Lilla, >> Here is a snapshot of the aseg volume, which rescues some gray matter not >> included in the pia. I am not sure if the aseg is ok, as the portion >> extending in the lesion is labeled gray matter (intensity 42). I guess this >> is not a problem. If I generate a surface from aseg as you suggested: a. I >> would need to >> generate a surface for each of the two hemispheres; b. If a is doable, is >> there a way to make it 'pial' in the sense that it gets registered with >> sphere and gets to be applied the DK atlas? A corrolary would be whether I >> can trick FS by labeling the new surface as smth.pial during the recon >> pipeline and further >> complete the rest of the processing steps to generate a true pia. >> Thank you for your assist, >> >> >> Octavian > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
