Re: [Freesurfer] Help with MRI labels {Disarmed}

2020-11-12 Thread Alberto Del Cerro Leon
External Email - Use Caution I want to obtain gray matter, withe matter volume, thickness and curvature based on AAL segmentation. El jue., 12 nov. 2020 15:27, Douglas N. Greve escribió: > So you want the AAL atlas on the surface? If so, then run recon-all on the > AAL

Re: [Freesurfer] Help with MRI labels

2020-11-12 Thread Douglas N. Greve
So you want the AAL atlas on the surface? If so, then run recon-all on the AAL anatomical T1w volume template, then use mri_vol2surf to sample the labels on the surface, then use this surface segmentation or extract labels (mri_cor2label with --surf option) or convert to an annotation

[Freesurfer] Help with MRI labels

2020-11-11 Thread Alberto Del Cerro Leon
External Email - Use Caution Good afternoon, my name is Alberto del Cerro and I am a PhD student in the cognitive and computational neuroscience laboratory (LNCyC) at the biomedical technology center (CTB) of the Polytechnic University of Madrid (UPM). I am currently extracting