Re: [Freesurfer] Merging two groups

Dear Bruce, Thank you. Now its working fine. On Thu, Nov 30, 2017 at 3:46 PM, Ramesh Babu wrote: > Dear Bruce, > Thank you very much for reply. > > I have to link fsavarage also. Because recently I have formated my system, > the link between freesurfer and fsaverage

Re: [Freesurfer] Merging two groups

Dear Bruce, Thank you very much for reply. I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken. I hope following link will be the correct one. If not please correct me. ln -s /usr/local/freesurfer/subjects/fsaverage

Re: [Freesurfer] Merging two groups

if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do: cd $dir2 foreach s ($subjects1) ln -s $dir1/$s end then all your subjects will be listed in dir2 that should do the trick On Wed, 29 Nov 2017, Ramesh Babu wrote: Dear Bruce,

Re: [Freesurfer] Merging two groups

Dear Bruce, Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage Please let me know

Re: [Freesurfer] Merging two groups

Thank you very much for your reply. On Mon, Nov 27, 2017 at 10:51 PM, Douglas N Greve wrote: > An easy solution is just to use a symbolic link (the ln command under > linux). That way you don't have to move anything at all. If you want to > move things, I would copy

Re: [Freesurfer] Merging two groups

Hi Ramesh probably easiest to symlink them cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote: Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory

[Freesurfer] Merging two groups

Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge? Thanks in advance RB

Re: [Freesurfer] Merging two groups

An easy solution is just to use a symbolic link (the ln command under linux). That way you don't have to move anything at all. If you want to move things, I would copy them, make sure the copy is ok, then delete the old version. rsync is good for this kind of thing too On 11/27/2017 12:14 PM,

[Freesurfer] Merging two groups

Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge? Thanks in advance RB