Dear Bruce, Thank you very much for reply. I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken. I hope following link will be the correct one. If not please correct me.
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > if you have two dirs, dir1 and dir2, with a set of subjects in each > (subjects1 and subjects2), you would do: > > cd $dir2 > foreach s ($subjects1) > ln -s $dir1/$s > end > > then all your subjects will be listed in dir2 > > that should do the trick > > On Wed, 29 Nov 2017, Ramesh Babu wrote: > > Dear Bruce, >> >> Thank for your reply. I am getting confusion in creating symlink. >> ln -s /usr/local/freesurfer/subjects/fsaverage >> /mnt/backup_data/freesurfer_analysis/subjects/ >> ln -s /usr/local/freesurfer/subjects/fsaverage >> /mnt/backup_data/freesurfer_analysis/subjects/fsaverage >> >> >> Please let me know how to create symbolic link? >> >> Thank you >> Ramesh >> >> On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Ramesh >> >> probably easiest to symlink them >> >> cheers >> Bruce >> On Tue, 28 Nov 2017, Ramesh Babu wrote: >> >> Hi, I have done recon-all -all processing for 2 groups in >> separate subjects directories. I want to >> put all subjects in one dkirectory. Should I copy paste all >> subject’s folders in one directory or >> is >> there any others steps to merge? >> >> Thanks in advance >> RB >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
