Dear Bruce, Thank you. Now its working fine.
On Thu, Nov 30, 2017 at 3:46 PM, Ramesh Babu <mgrameshbabu2...@gmail.com> wrote: > Dear Bruce, > Thank you very much for reply. > > I have to link fsavarage also. Because recently I have formated my system, > the link between freesurfer and fsaverage is broken. > I hope following link will be the correct one. If not please correct me. > > ln -s /usr/local/freesurfer/subjects/fsaverage > /mnt/backup_data/freesurfer_analysis/subjects/fsaverage > > On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> if you have two dirs, dir1 and dir2, with a set of subjects in each >> (subjects1 and subjects2), you would do: >> >> cd $dir2 >> foreach s ($subjects1) >> ln -s $dir1/$s >> end >> >> then all your subjects will be listed in dir2 >> >> that should do the trick >> >> On Wed, 29 Nov 2017, Ramesh Babu wrote: >> >> Dear Bruce, >>> >>> Thank for your reply. I am getting confusion in creating symlink. >>> ln -s /usr/local/freesurfer/subjects/fsaverage >>> /mnt/backup_data/freesurfer_analysis/subjects/ >>> ln -s /usr/local/freesurfer/subjects/fsaverage >>> /mnt/backup_data/freesurfer_analysis/subjects/fsaverage >>> >>> >>> Please let me know how to create symbolic link? >>> >>> Thank you >>> Ramesh >>> >>> On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl < >>> fis...@nmr.mgh.harvard.edu> wrote: >>> Hi Ramesh >>> >>> probably easiest to symlink them >>> >>> cheers >>> Bruce >>> On Tue, 28 Nov 2017, Ramesh Babu wrote: >>> >>> Hi, I have done recon-all -all processing for 2 groups in >>> separate subjects directories. I want to >>> put all subjects in one dkirectory. Should I copy paste all >>> subject’s folders in one directory or >>> is >>> there any others steps to merge? >>> >>> Thanks in advance >>> RB >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
