Sorry,
I meant to answer another email...
Roberto
> Hello,
>
> It is working fine for me
>
> regards
>
> Roberto
>
> On Vie, 24 de Abril de 2009, 10:38 am, Kathryn Devaney dijo:
>> Hi Bruce,
>>
>> Thanks! The lh.orig.nofix surface follows the white matter perfectly,
>> but the lh.orig surfac
Hello,
It is working fine for me
regards
Roberto
On Vie, 24 de Abril de 2009, 10:38 am, Kathryn Devaney dijo:
> Hi Bruce,
>
> Thanks! The lh.orig.nofix surface follows the white matter perfectly,
> but the lh.orig surface does not. So I suspect that the topology fixing
> step is creating this
Hi Bruce,
Thanks! The lh.orig.nofix surface follows the white matter perfectly,
but the lh.orig surface does not. So I suspect that the topology fixing
step is creating this problem.
However, when I load lh.defect_labels this area is not marked as a
defect, nor are there any major defects l
Hi Katie,
try looking at the lh.orig.nofix and lh.inflated.nofix surfaces to see if
you can see the defect.
cheers,
Bruce
On Thu, 23 Apr 2009, Kathryn Devaney wrote:
Hi Bruce & surfers,
That's what I thought initially, but then I did edit the wm.mgz to remove
topological defects, and re-ra
Hi Bruce & surfers,
That's what I thought initially, but then I did edit the wm.mgz to
remove topological defects, and re-ran the reconstruction from the
'fill' step, and this problem remains. I can't find a nearby defect in
the wm.mgz volume to edit, but maybe there is something that isn't
Hi Katie,
looks like an incorrectly fixed topological defect. You need to edit the
wm.mgz to remove the defect and rerun autorecon2-wm
cheers,
Bruce
On Wed, 22 Apr 2009,
Kathryn Devaney wrote:
Hello freesurfers,
I am running a reconstruction of a macaque in stabe4, and I am having a
probl
