What was your mri_vol2surf command?
On 7/14/2022 4:59 AM, Alberto Del Cerro Leon wrote:
External Email - Use Caution
Hello Freesurfer Team, I am trying to use a ROI to create a label into
fsaverage. Once I registered my ROI to the fsaverage space I performed
a mri_vol2surf and
External Email - Use Caution
Hello Freesurfer Team, I am trying to use a ROI to create a label into
fsaverage. Once I registered my ROI to the fsaverage space I performed a
mri_vol2surf and mri_cor2label to obtain a label of the ROI on the
fsaverage surface. However, this label
\ --noedit
-Original Message-
From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create
Dear freesurfer experts,
I have a series of labels corresponding to clusters of significant
activation in fsaverage space.
I want to map these back to native space using mri_label2label, however when
I view the individual (native) labels, the registration is way off and the
labels do not map
Hi John
can you email us your label2label cmdline?
cheers
Bruce
On Mon, 18 Jul 2011, John Richey
wrote:
Dear freesurfer experts,
I have a series of labels corresponding to clusters of significant
activation in fsaverage space.
I want to map these back to native space using
Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
Hi John
can you email us your label2label cmdline?
cheers
Bruce
On Mon, 18 Jul 2011, John Richey
wrote:
Dear freesurfer experts,
I have a series of labels corresponding to clusters
if dialated would become contiguous).
-Original Message-
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 11:20 AM
To: John Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
Hi John
can you
: [Freesurfer] Problem registering labels to native space
Hi John
why are you using an affine volume registration for fsaverage? Why not use
surface registration?
Bruce
On Mon, 18 Jul 2011, John Richey wrote:
Hi Bruce - thanks for the reply.
Here is my command line:
mri_label2label --srcsubject
and not
surface-based labels.
-Original Message-
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 12:00 PM
To: John Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] Problem registering labels to native space
Hi John
why are you
@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
You can't use a flirt matrix with mri_label2label. You can convert a flirt
matrix to the proper format with tkregister2 using the --fsl option (this
will allow you to check the reg as well).
doug
John Richey wrote:
Hi Bruce
...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 12:38 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
You can't use a flirt matrix with mri_label2label. You can convert a flirt
matrix to the proper format
...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create it? What is the actual fsaverage space? Is this an
FSFAST analysis?
doug
John Richey wrote:
Hi
: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create it? What is the actual fsaverage space
Hi Irene,
the label has to shift somewhat in tksurfer, since it will sample it onto
the surface. Unless the entire label you drew was exactly on the surface
boundary to begin with.
cheers
Bruce
On Tue, 21 Dec 2010, Irene Altarelli wrote:
Dear Freesurfers,
I have a problem with labels. I
-0400 (EDT)
From: Kevin Teich [EMAIL PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: Xander Meadow [EMAIL PROTECTED]
Actually, I just veried that those are the correct versions
to be used
together.
The only other thing I can think of is that the binary is
finding a
different
: [Freesurfer] Problem filling labels
To: [EMAIL PROTECTED]
I can't duplicate this at all. Has this ever worked for you,
or did it
stop working?
Can you give me the output of
tksurfer --version
On Fri, 8 Jul 2005 [EMAIL PROTECTED] wrote:
In the Fill box the one I am trying to use is Up
the dollar sign. Does this give you any clues? Thanks so
much for helping me out with this.
Xander
Original message
Date: Fri, 8 Jul 2005 13:17:45 -0400 (EDT)
From: Kevin Teich [EMAIL PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: [EMAIL PROTECTED]
I can't duplicate
PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: [EMAIL PROTECTED]
I can't duplicate this at all. Has this ever worked for you,
or did it
stop working?
Can you give me the output of
tksurfer --version
On Fri, 8 Jul 2005 [EMAIL PROTECTED] wrote:
In the Fill box the one I am
: Kevin Teich [EMAIL PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: Xander Meadow [EMAIL PROTECTED]
Actually, I just veried that those are the correct versions
to be used
together.
The only other thing I can think of is that the binary is
finding a
different version
file to I tell Freesurfer to look at the
correct tksurfer.tcl file? Thanks very much.
Xander
Original message
Date: Fri, 8 Jul 2005 17:35:18 -0400 (EDT)
From: Kevin Teich [EMAIL PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: Xander Meadow [EMAIL PROTECTED]
Actually
2005 17:27:20 -0400 (EDT)
From: Kevin Teich [EMAIL PROTECTED]
Subject: Re: [Freesurfer] Problem filling labels
To: Xander Meadow [EMAIL PROTECTED]
Cc: freesurfer@nmr.mgh.harvard.edu
What were your settings in the Fill dialog box? Does this
always happen,
or only with a specific combination
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