[Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Zoellner, Frank
Hi, I am currently working on a project involving brain morphometry of 2 year old children. We are interested in segmenting the ventricle and I tried to run freesurfer using the standard recon-all -all for a first test. Unfortunately, freesurfer reports an error (see attached log file). I als

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Zoellner, Frank
.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 10:35 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] Processing of young children using Freesurfer Hi, I am currently working on a project involving brain morph

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Bruce Fischl
hmmm, this doesn't seem to have to do with your data but maybe is an installation problem? It says it failed but doesn't give an error message, which is unusual. Can you try just typing in directly: cd /media/sf_cdh_ventrikel/test_002/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 5

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Zoellner, Frank
arvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Dienstag, 9. Februar 2016 14:12 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using Freesurfer hmmm, this doesn't seem to have to do with your data but maybe is a

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-10 Thread Zoellner, Frank
t/cbtm/ckm/ -Ursprüngliche Nachricht- Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 15:49 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread Bruce Fischl
harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 15:49 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using Freesurfer Hi Bruce, thanks for the reply. Here comes the output (see attached). I just downloaded the VM with freesurfer fr

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread Z K
.@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von >> Zoellner, Frank >> Gesendet: Dienstag, 9. Februar 2016 15:49 >> An: Freesurfer support list >> Betreff: Re: [Freesurfer] Processing of young children using Freesurfer >> >&

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread fz2
5117 >>> Fax: +49 (0)621 3835123 >>> Email: frank.zoell...@medma.uni-heidelberg.de >>> Web: http://www.umm.uni-heidelberg.de/inst/cbtm/ckm/ >>> >>> >>> -Ursprüngliche Nachricht- >>> Von: freesurfer-boun...@nmr.mgh.harvard.e