hmmm, this doesn't seem to have to do with your data but maybe is an
installation problem? It says it failed but doesn't give an error
message, which is unusual. Can you try just typing in directly:
cd /media/sf_cdh_ventrikel/test_002/mri
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i
orig.mgz --o orig_nu.mgz
and send us the output?
cheers
Bruce
On Tue, 9
Feb 2016, Zoellner, Frank wrote:
Hi,
I am currently working on a project involving brain morphometry of 2 year
old children.
We are interested in segmenting the ventricle and I tried to run freesurfer
using the standard recon-all -all for a first test.
Unfortunately, freesurfer reports an error (see attached log file).
I also read about that it is advised to run freesurfer with patient age >5
but maybe someone has an idea how to solve this.
As far as I get from the step it crashes at the intensity correction step?
Do I need to calculate some sort of template maybe ?
Any comments welcome
Yours
Frank
----------------
PD Dr. Frank Zoellner
Group Leader "MRI and Medical Image Analysis"
Computer Assisted Clinical Medicine
Medical Faculty Mannheim
Heidelberg University
Theodor-Kutzer-Ufer 1-3
D-68167 Mannheim
Phone: +49 (0)621 3835117
Fax: +49 (0)621 3835123
Email: frank.zoell...@medma.uni-heidelberg.de
Web: http://www.umm.uni-heidelberg.de/inst/cbtm/ckm/
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