Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Joana Braga Pereira
: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Thanks for the pointers, Chris. I'd call it an opportunity for FSL customization rather than an FSL problem per se :o) On Mon, 2 Sep 2013, Watson, Christopher wrote: This is an FSL problem. You can try the FSL list, and check out

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Watson, Christopher
, September 02, 2013 3:46 PM To: Watson, Christopher Cc: Joana Braga Pereira; freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Thanks for the pointers, Chris. I'd call it an opportunity for FSL customization

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Joana Braga Pereira
, September 02, 2013 3:46 PM To: Watson, Christopher Cc: Joana Braga Pereira; freesurfer@nmr.mgh.harvard.edumailto: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Thanks for the pointers, Chris. I'd call it an opportunity for FSL customization

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Watson, Christopher
@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Hi Christopher, Thanks a lot for such a prompt reply. I know I should overlay the tracts of the FA image, but I just wanted to show you how small the reconsctrutions were. I don't think this is particularly noisy data

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Anastasia Yendiki
; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Thanks for the pointers, Chris. I'd call it an opportunity for FSL customization rather than an FSL problem per se :o) On Mon, 2 Sep 2013, Watson, Christopher wrote

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Joana Braga Pereira
Cc: Joana Braga Pereira; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q Thanks for the pointers, Chris. I'd call it an opportunity for FSL

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Anastasia Yendiki
                  To: Watson, Christopher                   Cc: Joana Braga Pereira; freesurfer@nmr.mgh.harvard.edu                   Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q                   Thanks for the pointers, Chris. I'd call

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-05 Thread Anastasia Yendiki
]       Sent: Monday, September 02, 2013 3:46 PM       To: Watson, Christopher       Cc: Joana Braga Pereira; freesurfer@nmr.mgh.harvard.edu       Subject: Re: [Freesurfer] Tracula error - unknown queue long.q, short.q       Thanks for the pointers, Chris. I'd

[Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-02 Thread Joana Braga Pereira
Dear Anastasia and FreeSurfers, I was preprocessing some data using tracula and found this error after running trac-all -bedp -c dmrirc: INFO: SUBJECTS_DIR is /data-02/joana/Last INFO: Diffusion root is /data-02/joana/tracula/ Actual FREESURFER_HOME /usr/local/freesurfer-5.3 WARN: Running FSL's

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-02 Thread Anastasia Yendiki
Hi Joana - What system are you running this on? a.y On Mon, 2 Sep 2013, Joana Braga Pereira wrote: Dear Anastasia and FreeSurfers, I was preprocessing some data using tracula and found this error after running  trac-all -bedp -c dmrirc: INFO: SUBJECTS_DIR is /data-02/joana/Last INFO:

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-02 Thread Watson, Christopher
error - unknown queue long.q, short.q Dear Anastasia and FreeSurfers, I was preprocessing some data using tracula and found this error after running trac-all -bedp -c dmrirc: INFO: SUBJECTS_DIR is /data-02/joana/Last INFO: Diffusion root is /data-02/joana/tracula/ Actual FREESURFER_HOME /usr/local

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-02 Thread Anastasia Yendiki
...@nmr.mgh.harvard.edu] on behalf of Joana Braga Pereira [jbragapere...@gmail.com] Sent: Monday, September 02, 2013 9:53 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Tracula error - unknown queue long.q, short.q Dear Anastasia and FreeSurfers, I was preprocessing some data using tracula

Re: [Freesurfer] Tracula error - unknown queue long.q, short.q

2013-09-02 Thread Watson, Christopher
...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Joana Braga Pereira [jbragapere...@gmail.com] Sent: Monday, September 02, 2013 9:53 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Tracula error - unknown queue long.q, short.q Dear Anastasia and FreeSurfers, I