[Freesurfer] Two timepoints - same subject, correlation matrix

Hi, Can somebody please help me figure out how to correct this issue? 1 subject - 2 functional scans 1) run recon-all on subject anatomical. 2) process functional series (using AFNI/FSL) - each individually. 3) use (http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html) @ROI_Co

Re: [Freesurfer] Two timepoints - same subject, correlation matrix

On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" wrote: > Hi, > > Can somebody please help me figure out how to correct this issue? > > 1 subject - 2 functional scans > > 1) run recon-all on subject anatomical. > > 2) process functional series (using AFNI/FSL) - each individually. > > 3) us

Re: [Freesurfer] Two timepoints - same subject, correlation matrix

Hi Sudhin, this looks like an AFNI question. Have you tried posting to the AFNI list? doug Sudhin A. Shah wrote: > > > > > On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" > wrote: > >> Hi, >> >> Can somebody please help me figure out how to correct this issue? >> >>

Re: [Freesurfer] Two timepoints - same subject, correlation matrix

Hi, So I think I found the solution - (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RegisterFeatOntoAnatomical) reg-feat2anat aseg2feat or aparc2feat New question: Is there anyway to combine aseg2feat and aparc2feat? i.e. get all subcortical and cortical segmentations registered to fun

Re: [Freesurfer] Two timepoints - same subject, correlation matrix

Got it : aseg2feat --feat featdir --seg aparc+aseg On 06/22/11, "Sudhin A. Shah" wrote: > > > Hi, > > So I think I found the solution - > (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RegisterFeatOntoAnatomical) > > reg-feat2anat > aseg2feat or aparc2feat > > New question: > Is th