Hi Sudhin, this looks like an AFNI question. Have you tried posting to the AFNI list? doug
Sudhin A. Shah wrote: > > > > > On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" <sut2...@med.cornell.edu > <mailto:sut2...@med.cornell.edu>> wrote: > >> Hi, >> >> Can somebody please help me figure out how to correct this issue? >> >> 1 subject - 2 functional scans >> >> 1) run recon-all on subject anatomical. >> >> 2) process functional series (using AFNI/FSL) - each individually. >> >> 3) use >> (http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html) >> @ROI_Corr_Mat -ts proc_func1 -roi aparc+aseg -prefix all (each >> individually) >> >> This works (I don't know why since I am not doing anything to >> register them to a common space). >> >> 4) I get a square matrix of 109 (n x n correlation matrix) in 1 >> timepoint and 112 in 2nd timepoint. >> >> I would like to get the /exact same number /so I can compare them! Of >> course I can manually adjust the rows/columns later, but I am not >> sure this is the smartest way to do this. >> >> Can I do all the steps in Freesurfer? >> >> Thank you, >> S >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
