On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" <sut2...@med.cornell.edu> wrote: > Hi, > > Can somebody please help me figure out how to correct this issue? > > 1 subject - 2 functional scans > > 1) run recon-all on subject anatomical. > > 2) process functional series (using AFNI/FSL) - each individually. > > 3) use (http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html) > @ROI_Corr_Mat -ts proc_func1 -roi aparc+aseg -prefix all (each individually) > > This works (I don't know why since I am not doing anything to register them > to a common space). > > 4) I get a square matrix of 109 (n x n correlation matrix) in 1 timepoint and > 112 in 2nd timepoint. > > I would like to get the exact same number so I can compare them! Of course I > can manually adjust the rows/columns later, but I am not sure this is the > smartest way to do this. > > Can I do all the steps in Freesurfer? > > Thank you, > S > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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