Re: [Freesurfer] bbregister question

2009-08-20 Thread Martin Reuter
Hi Guang, to register two volumes of the same person (6 degree of freedom: translation, rotation) you can use mri_robust_register --mov 002.mgz --dst 001.mgz --lta 2to1.lta --warp 2to1.mgz This will register 002.mgz to 001.mgz output the transform 2to1.lta and the source mapped to the target as

Re: [Freesurfer] bbregister question

2009-08-20 Thread Douglas N Greve
you can use fslregister or spmregister instead doug Guang Zeng wrote: > Hi, there, > > Sorry, I asked the same question yesterday, but I think I didn't > explain it clear. > I have the two scans (001.mgz and 002.mgz) of the same subject, > 001.mgz is used as the input of recon-all -autorec

[Freesurfer] bbregister question

2009-08-20 Thread Guang Zeng
Hi, there, Sorry, I asked the same question yesterday, but I think I didn't explain it clear. I have the two scans (001.mgz and 002.mgz) of the same subject, 001.mgz is used as the input of recon-all -autorecon1, and I only run -autorecon1. now I have a brainmask.mgz using 001.mgz, I wan