you can use fslregister or spmregister instead doug
Guang Zeng wrote: > Hi, there, > > Sorry, I asked the same question yesterday, but I think I didn't > explain it clear. > I have the two scans (001.mgz and 002.mgz) of the same subject, > 001.mgz is used as the input of recon-all .... -autorecon1, and I > only run -autorecon1. > now I have a brainmask.mgz using 001.mgz, I want to register 002.mgz > using brainmask.mgz as reference volume. > > Dr. Greve mentioned that I can use bbregister, but I got a problem > now, becuase I only run autorecon1, I do not have lh.white which will > be acquired after autorecon2. > The bbregister command stopped in the middel. > > My command line is > > bbregister --s data_2 --mov 002.mgz --init-fsl --t1 --reg brainreg.dat > --o brainmaskReg.mgz > > I got a error as, > > Loading mov > Loading lh.white surf > No such file or directory > > Is there an option that I do not use lh.white, just use the > information I got after autorecon1 to do the registration, or I need > use other commands? > > Thanks a lot! > > Guang > > > ------------------------------------------------------------------------ > Windows Live: Make it easier for your friends to see what you’re up to > on Facebook. Find out more. > <http://windowslive.com/Campaign/SocialNetworking?ocid=PID23285::T:WLMTAGL:ON:WL:en-US:SI_SB_facebook:082009> > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
