[Freesurfer] bug in pial placement with FLAIR images

2022-12-15 Thread Douglas N. Greve
I recently found a bug in the pial placement refinement with FLAIR images (recon-all -flair ...) that affects version 7.{0,1,2,3}. This bug caused the pial surfaces to not extend nearly far enough. It has been fixed in the development version of FS and so will be in future versions. If you want

Re: [Freesurfer] bug in pial placement with FLAIR images

2022-12-15 Thread Boa Sorte Silva, Narlon
External Email - Use Caution Thanks for the update! If I recall it correctly, in our lab we did notice that to be an issue with T2 images (v7.1.1) as well (recon-all -T2). Nárlon Cássio Nárlon Cássio Boa Sorte Silva PhD (He, Him, His) CIHR and MSHR BC/PARF Postdoctoral Researc

Re: [Freesurfer] bug in pial placement with FLAIR images

2022-12-16 Thread Douglas N. Greve
Right, it only affects FLAIR, not T2 On 12/15/2022 4:51 PM, Boa Sorte Silva, Narlon wrote: External Email - Use Caution Thanks for the update! If I recall it correctly, in our lab we did notice that to be an issue  with T2 images (v7.1.1) as well (recon-all -T2). Nárlon Cássio *Ná