Right, it only affects FLAIR, not T2
On 12/15/2022 4:51 PM, Boa Sorte Silva, Narlon wrote:
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Thanks for the update!
If I recall it correctly, in our lab we did notice that to be an issue
with T2 images (v7.1.1) as well (recon-all -T2).
Nárlon Cássio
*Nárlon Cássio Boa Sorte Silva* PhD (He, Him, His)
CIHR and MSHR BC/PARF Postdoctoral Research Fellow
Aging, Mobility, and Cognitive Health Lab
Djavad Mowafaghian Centre for Brain Health
Department of Physical Therapy, Faculty of Medicine
University of British Columbia
Vancouver, Canada
Twitter: @BoaNarlon
On Dec 15, 2022, at 11:46 AM, Douglas N. Greve
<dgr...@mgh.harvard.edu> wrote:
[CAUTION: Non-UBC Email]
I recently found a bug in the pial placement refinement with FLAIR
images (recon-all -flair ...) that affects version 7.{0,1,2,3}. This bug
caused the pial surfaces to not extend nearly far enough. It has been
fixed in the development version of FS and so will be in future
versions. If you want to access the fix before then, create a
$SUBJECTS_DIR/global-expert-options.txt with this line
PlaceMMPialSurf --mm_min_inside 50 --mm_max_inside 200 --mm_min_outside
10 --mm_max_outside 50
sorry for any inconvenience
doug
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