I recently found a bug in the pial placement refinement with FLAIR
images (recon-all -flair ...) that affects version 7.{0,1,2,3}. This bug
caused the pial surfaces to not extend nearly far enough. It has been
fixed in the development version of FS and so will be in future
versions. If you want to access the fix before then, create a
$SUBJECTS_DIR/global-expert-options.txt with this line
PlaceMMPialSurf --mm_min_inside 50 --mm_max_inside 200 --mm_min_outside
10 --mm_max_outside 50
sorry for any inconvenience
doug
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