Dear freeSurfer,
Thank you. I can use mris_anatomical_stats for the labels that are already
defined, but when I want to define a new label, it does not work.
My first problem is that when I define a new label on fsaverage, it does
not save it for me and it gives me the following error:
If you have a label, then you can use mris_anatomical_stats with the -l
option
doug
On 05/06/2016 10:01 AM, Mahtab Farahbakhsh wrote:
> Dear FreeSurfer,
>
> I am trying to find the cortical thickness of my ROI which is the
> perisylvian region of the left hemisphere. What I did was to define a
Dear FreeSurfer,
I am trying to find the cortical thickness of my ROI which is the
perisylvian region of the left hemisphere. What I did was to define a label
based on the anatomical area of this region and tried to define a ROI based
on this label and the command -mri_label2volume. Howevere, I
Dear FreeSurfer,
I am trying to find the cortical thickness of my ROI which is the
perisylvian region of the left hemisphere. What I did was to define a label
based on the anatomical area of this region and tried to define a ROI based
on this label and the command -mri_label2volume. Howevere, I
Dear Experts,
I tried to extract freesurfer cortical values for a ROI defined in a spm-vbm
analysis following the instructions
(https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness) and got
stuck at step 2. Please could you kindly assist?
[spjwker@nanlnx2 FSL]0% cd
you don't have write permission to that folder. Get write permission or
put the reg file in a different place
On 9/16/15 9:45 AM, Lim, Lena wrote:
Dear Experts,
I tried to extract freesurfer cortical values for a ROI defined in a
spm-vbm analysis following the instructions
Dear Experts,
I am re-posting this again as i am still stuck, please kindly help?
I tried to extract freesurfer cortical values for a ROI defined in a spm-vbm
analysis using the commands below but it didn't work.. please could you kindly
assist (log attached)?
[spjwker@nanlnx2 FSL]0%
Dear Experts,
I tried to extract freesurfer cortical values for a ROI defined in a spm-vbm
analysis using the commands below but it didn't work.. please could you kindly
assist (log attached)?
[spjwker@nanlnx2 FSL]0% cd $SUBJECTS_DIR/fsaverage/surf
[spjwker@nanlnx2 surf]0% fslregister --s
Dear Freesurfers,
I would like to map my subject thickness data to the fsaverage subject,
following ROI analyses, as described under step 4:
http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness
Before step 4, tksurfer showed me that registration from MNI to Freesurfer
space of
Try adding --reshape-factor 7
doug
Righart, Ruthger Dr. wrote:
Dear Freesurfers,
I would like to map my subject thickness data to the fsaverage subject,
following ROI analyses, as described under step 4:
http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness
Before step 4,
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