Dear FreeSurfer experts,
Could you please advise on whether it would be possible to run recon-all in
FreeSurfer 6.0 using externally-derived probabilistic white matter and grey
matter masks, both of which include the cerebellum but not the ventricles, and
if so, how? Would the flag -autorecon2
Hi Shadia
no, not easily.
sorry,
Bruce
On Fri, 12 Jan 2018, MIKHAEL Shadia wrote:
> Dear FreeSurfer experts,
>
> Could you please advise on whether it would be possible to run recon-all in
> FreeSurfer 6.0 using externally-derived probabilistic white matter and grey
> matter masks, both of whi
Dear Bruce,
Thank you for your reply at
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2018-January/055512.html
regarding the use of grey and white matter masks.
Since you were suggesting that this may be difficult, I have instead tried to
introduce external masks at a later stage (ri
...@nmr.mgh.harvard.edu
on behalf of MIKHAEL Shadia
Sent: Sunday, January 21, 2018 1:58:00 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] external WM and GM masks as input to recon-all?
Dear Bruce,
Thank you for your reply at
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2018
