Hi Shadia no, not easily.
sorry, Bruce On Fri, 12 Jan 2018, MIKHAEL Shadia wrote: > Dear FreeSurfer experts, > > Could you please advise on whether it would be possible to run recon-all in > FreeSurfer 6.0 using externally-derived probabilistic white matter and grey > matter masks, both of which include the cerebellum but not the ventricles, > and if so, how? Would the flag -autorecon2-pial suffice? > > Thank you in advance. > > Shadia > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
