That is the command that I would use. Make sure your activation map
actually lines up with the MNI152 brain found in FSL.
dopug
Yigal Agam wrote:
> Hi Doug,
>
> Returning to this old thread: I'm doing what you said and getting
> weird results (activation not where I think it should be):
>
> mri
Hi Doug,
Returning to this old thread: I'm doing what you said and getting weird
results (activation not where I think it should be):
mri_vol2vol --mov --targ --inv
--reg $FREESURFER_HOME/average/mni152.register.dat --o --no-save-reg
Can you give an example of the command you would use?
T
Nope. Try using fslregister with --dof 12 and use
$FSLDIR/data/standard/MNI152_T1_2mm_brain.nii.gz as the --mov.
doug
Yigal Agam wrote:
> Thanks, Doug. Also, how can this be done from an individual brain to
> mni152? Do I need to use fsaverage as an intermediate?
>
> Yigal
>
> Douglas N Greve w
Thanks, Doug. Also, how can this be done from an individual brain to
mni152? Do I need to use fsaverage as an intermediate?
Yigal
Douglas N Greve wrote:
> Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with
> --inv
>
> Yigal Agam wrote:
>> Hi,
>>
>> What's the best way to conv
Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with --inv
Yigal Agam wrote:
> Hi,
>
> What's the best way to convert an fsaverage volume into an MNI152 volume
> that can be viewed on top of a standard brain
> (MNI152_T1_2mm_brain.nii.gz) in fslview?
>
> Thanks,
> Yigal
> __
Hi,
What's the best way to convert an fsaverage volume into an MNI152 volume
that can be viewed on top of a standard brain
(MNI152_T1_2mm_brain.nii.gz) in fslview?
Thanks,
Yigal
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