The argument to --src_type should be the input file (eg, lh.curv,
lh.sulc, lh.thickness). The --trgsurfval should be the name of the
output file and --trg_type should be curv
doug
On 7/30/13 3:25 AM, fatma zribi wrote:
Dear Bruce,
I try to execute this command to smooth and resample data b
Hi Bruce,
thank you very much it works!
With best regards,
Fatma
2013/7/30 Bruce Fischl
> Hi Fatma
>
> try giving it the full path to the curv file. I think "curv" is the right
> format to specify, but I believe it needs the full path to the src and
> target
>
> cheers
> Bruce
>
> On Tue, 30
Hi Fatma
try giving it the full path to the curv file. I think "curv" is the right
format to specify, but I believe it needs the full path to the src and
target
cheers
Bruce
On Tue, 30 Jul 2013, fatma zribi wrote:
Dear Bruce,
I try to execute this command to smooth and resample data but I
Dear Bruce,
I try to execute this command to smooth and resample data but I have one
message of error:
mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_normlalized
--srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD
--trgsurfval curv --hemi lh --fwhm-src 15 --trg_type smoothed
can you cc the list so that others can answer or see the answer? You need
to specify the source and target subjects with --srcsubject and
--trgsubject
cheers
Bruce
On Mon, 29
Jul 2013, fatma zribi wrote:
mri_surf2surf --hemi lh --s s000_open_brain_sanlm_+TIR_normlalized --sval curv
--src
what is your full command line? You can smooth and map with it (use
-fwhm-src or fwhm-trg to smooth in either the source or target space)
On
Mon, 29 Jul 2013, fatma zribi wrote:
Dear Bruce,
I have tried mri-surf2surf, it makes the result (smoothed curv for example)
with the same dimension of
Dear Bruce,
I have tried mri-surf2surf, it makes the result (smoothed curv for example)
with the same dimension of the subject. But I would like a smoothed file
with the dimesion of fsaverage.
Thank you for your help.
With best regards,
Fatma
2013/7/29 Bruce Fischl
> Hi Fatma
>
> you can use
Hi Fatma
you can use mri_surf2surf within subject I believe, but Doug can confirm
(although he's traveling so it may be a bit). You can also do it
interactively in tksurfer.
cheers
Bruce
On Mon, 29 Jul 2013, fatma
zribi wrote:
Dear Bruce,
Would you mind tell me if there is a function o
Dear Bruce,
Would you mind tell me if there is a function of freesurfer that I can use
to do the same step of qcache to smooth and interpolate in the fsaverage
one subject
with mri_surf2surf I can smooth only or align one subject with an average.
thank you for you help.
with best regards,
Fatma
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