Hi Fatma
try giving it the full path to the curv file. I think "curv" is the right
format to specify, but I believe it needs the full path to the src and
target
cheers
Bruce
On Tue, 30 Jul 2013, fatma zribi wrote:
Dear Bruce,
I try to execute this command to smooth and resample data but I have one
message of error:
mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_normlalized
--srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD
--trgsurfval curv --hemi lh --fwhm-src 15 --trg_type smoothed.source.15
the error is: ERROR: could not determine type of curv
thank you for your help,
With best regards,
Fatma
2013/7/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
can you cc the list so that others can answer or see the answer?
You need to specify the source and target subjects with
--srcsubject and --trgsubject
cheers
Bruce
On Mon, 29 Jul 2013, fatma zribi wrote:
mri_surf2surf --hemi lh --s
s000_open_brain_sanlm_+TIR_normlalized --sval curv
--src_type curv --fwhm 10 --trg_type curv --tval
curv.10
2013/7/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
what is your full command line? You can smooth
and map with it (use -fwhm-src or fwhm-trg to smooth
in either the
source or target space)
On Mon, 29 Jul 2013, fatma zribi wrote:
Dear Bruce,
I have tried mri-surf2surf, it makes the
result (smoothed curv for example) with the same
dimension of
the subject. But I would
like a smoothed file with the dimesion
of fsaverage.
Thank you for your help.
With best regards,
Fatma
2013/7/29 Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
Hi Fatma
you can use mri_surf2surf within
subject I believe, but Doug can confirm (although
he's traveling
so it may be a
bit). You can also do it
interactively in tksurfer.
cheers
Bruce
On Mon, 29 Jul 2013, fatma zribi
wrote:
Dear Bruce,
Would you mind tell me if
there is a function of freesurfer that I can use to
do the same
step of
qcache to smooth and
interpolate in the fsaverage
one subject
with mri_surf2surf I can
smooth only or align one subject with an average.
thank you for you help.
with best regards,
Fatma
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