Re: [Freesurfer] labels export

2012-04-25 Thread Gabriel Gonzalez Escamilla
And what about exporting as obj format, I have found a function to transform surfaces to obj, is it possible something like this but with the labels?Regards,GabrielEl 24/04/12, Bruce Fischl fis...@nmr.mgh.harvard.edu escribió:they are just ascii files so it should be easy enough to do yourselfOn

Re: [Freesurfer] labels export

2012-04-25 Thread Bruce Fischl
sorry, I don't know what obj format is either Bruce On Wed, 25 Apr 2012, Gabriel Gonzalez Escamilla wrote: And what about exporting as obj format, I have found a function to transform surfaces to obj, is it possible something like this but with the labels? Regards, Gabriel El 24/04/12,

[Freesurfer] labels export

2012-04-24 Thread Gabriel Gonzalez Escamilla
Hello FreeSurfers,Does any one of you know if exist a function to export labels as a ROI format?Regards,Gabriel-- --PhD. student Gabriel González-EscamillaLaboratory of Functional NeuroscienceDepartment of Physiology, Anatomy, and Cell BiologyUniversity Pablo de

Re: [Freesurfer] labels export

2012-04-24 Thread Priti Srinivasan
Hi Gabriel, Have you tried mri_label2vol? If you want the volume in the anatomical space: mri_label2vol --label labelname.label --temp T1_template.nii.gz --identity --o volumename.nii.gz If you want it in some other space, you can specify the registration matrix using --reg and the template

Re: [Freesurfer] labels export

2012-04-24 Thread Gabriel Gonzalez Escamilla
Thanks Priti,I've thought about that before, but actually I'm looking for literally .roi images, do you know if is this format possible from FS?Regards,GabrielEl 24/04/12, Priti Srinivasan rspr...@nmr.mgh.harvard.edu escribió:Hi Gabriel,Have you tried mri_label2vol?If you want the volume in the

Re: [Freesurfer] labels export

2012-04-24 Thread Douglas N Greve
I don't think so. What is .roi format? On 04/24/2012 12:21 PM, Gabriel Gonzalez Escamilla wrote: Thanks Priti, I've thought about that before, but actually I'm looking for literally .roi images, do you know if is this format possible from FS? Regards, Gabriel El 24/04/12, *Priti

Re: [Freesurfer] labels export

2012-04-24 Thread Bruce Fischl
they are just ascii files so it should be easy enough to do yourself On Tue, 24 Apr 2012, Gabriel Gonzalez Escamilla wrote: Thanks Priti, I've thought about that before, but actually I'm looking for literally .roi images, do you know if is this format possible from FS? Regards, Gabriel