Hi Gabriel, Have you tried mri_label2vol?
If you want the volume in the anatomical space: mri_label2vol --label labelname.label --temp <T1_template>.nii.gz --identity --o volumename.nii.gz If you want it in some other space, you can specify the registration matrix using --reg and the template using --temp. Hope that helps, Priti > <div style="font-family: 'Times New Roman'; font-size: 16px; "><div>Hello > FreeSurfers,</div><div><br /></div><div>Does any one of you know if exist > a function to export labels as a ROI format?</div><div><br > /></div><div>Regards,</div><div>Gabriel</div></div><div><br />-- <br > /></div><div><font size="3">--------------------------<br />PhD. student > Gabriel González-Escamilla<br />Laboratory of Functional Neuroscience<br > />Department of Physiology, Anatomy, and Cell Biology<br />University > Pablo de Olavide<br />Ctra. de Utrera, Km.1<br />41013 - Seville<br />- > Spain -<br /><br />Email: ggon...@upo.es<br > />http://www.upo.es/neuroaging/es/</font></div> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
