they are just ascii files so it should be easy enough to do yourself
On Tue,
24 Apr 2012, Gabriel Gonzalez Escamilla wrote:
Thanks Priti,
I've thought about that before, but actually I'm looking for literally .roi
images, do you know if is this format possible from FS?
Regards,
Gabriel
El 24/04/12, Priti Srinivasan <rspr...@nmr.mgh.harvard.edu> escribió:
Hi Gabriel,
Have you tried mri_label2vol?
If you want the volume in the anatomical space:
mri_label2vol --label labelname.label --temp <T1_template>.nii.gz
--identity --o volumename.nii.gz
If you want it in some other space, you can specify the registration
matrix using --reg and the template using --temp.
Hope that helps,
Priti
> <div style="font-family: 'Times New Roman'; font-size: 16px;
"><div>Hello
> FreeSurfers,</div><div><br /></div><div>Does any one of you know if
exist
> a function to export labels as a ROI format?</div><div><br
> /></div><div>Regards,</div><div>Gabriel</div></div><div><br />-- <br
> /></div><div><font size="3">--------------------------<br />PhD. student
> Gabriel González-Escamilla<br />Laboratory of Functional Neuroscience<br
> />Department of Physiology, Anatomy, and Cell Biology<br />University
> Pablo de Olavide<br />Ctra. de Utrera, Km.1<br />41013 - Seville<br />-
> Spain -<br /><br />Email: ggon...@upo.es<br
> />http://www.upo.es/neuroaging/es/</font></div>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
--
--------------------------
PhD. student Gabriel González-Escamilla
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cell Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Seville
- Spain -
Email: ggon...@upo.es
http://www.upo.es/neuroaging/es/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
