[Freesurfer] mri_label2vol error

External Email - Use Caution Hi, I get the following error message when I run mri_label2vol (freesurfer v 6.0) in a jupyter notebook(6.1.4) with python (v3.8.5): dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfe

[Freesurfer] mri_label2vol error

External Email - Use Caution Dear Doug, I have been having the following issue and haven't figured out a way to get around it. I have also searched the archive and did not find anything relevant enough to be helpful. The context is, I am drawing functional ROIs on volumetric data

Re: [Freesurfer] mri_label2vol error

: [Freesurfer] mri_label2vol error External Email - Use Caution Hi, I get the following error message when I run mri_label2vol (freesurfer v 6.0) in a jupyter notebook(6.1.4) with python (v3.8.5): dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from

Re: [Freesurfer] mri_label2vol error

Can you send your command line and full terminal output? On 1/8/2023 9:37 PM, Shao-Min (Sean) Hung wrote: External Email - Use Caution Dear Doug, I have been having the following issue and haven't figured out a way to get around it. I have also searched the archive and did not find

Re: [Freesurfer] mri_label2vol error

External Email - Use Caution Sure. Here's the command line: -- mri_label2vol --label /Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/Retinolabels/TF.label --temp /Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/004/fmc.nii.gz --reg /Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/reg

Re: [Freesurfer] mri_label2vol error

What volume did the TF.label come from? Whatever it is, try adding --tkr-template volume.nii.gz On 1/12/2023 9:12 PM, Shao-Min (Sean) Hung wrote: External Email - Use Caution Sure. Here's the command line:  -- mri_label2vol --label /Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/Ret

Re: [Freesurfer] mri_label2vol error

External Email - Use Caution Hi Doug, That solved the problem like a charm. By the way, the volume came from brain.mgz. Thank you! Regards, Sean On Sat, Jan 14, 2023 at 12:28 AM Douglas N. Greve wrote: > What volume did the TF.label come from? Whatever it is, try adding > --tk

[Freesurfer] mri_label2vol error: could not scan # of lines from label file

Hello FreeSurfer Developers, I’m attempting to convert a dlabel file from the Human Connectome Project to a volumetric ROI that I can use for fiber tractography on other platforms. I followed the tutorial provided by HCP (hcp-users FAQ #9: How do I map data between FreeSurfer ... - HCP Wiki

Re: [Freesurfer] mri_label2vol error: could not scan # of lines from label file

Hi Joshua hmmm, label2vol takes our text label file format as input, not a .gii file. You probably need to ask the Wash U HCP folks how to do this conversion as I believe there should be a step before label2vol cheers Bruce On Thu, 9 Mar 2017, Burks, Joshua D (HSC) wrote: Hello FreeSurf