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Hi,
I get the following error message when I run mri_label2vol (freesurfer v 6.0)
in a jupyter notebook(6.1.4) with python (v3.8.5):
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfe
External Email - Use Caution
Dear Doug,
I have been having the following issue and haven't figured out a way to get
around it. I have also searched the archive and did not find
anything relevant enough to be helpful.
The context is, I am drawing functional ROIs on volumetric data
: [Freesurfer] mri_label2vol error
External Email - Use Caution
Hi,
I get the following error message when I run mri_label2vol (freesurfer v 6.0)
in a jupyter notebook(6.1.4) with python (v3.8.5):
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from
Can you send your command line and full terminal output?
On 1/8/2023 9:37 PM, Shao-Min (Sean) Hung wrote:
External Email - Use Caution
Dear Doug,
I have been having the following issue and haven't figured out a way
to get around it. I have also searched the archive and did not find
External Email - Use Caution
Sure.
Here's the command line:
--
mri_label2vol --label
/Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/Retinolabels/TF.label --temp
/Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/004/fmc.nii.gz --reg
/Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/reg
What volume did the TF.label come from? Whatever it is, try adding
--tkr-template volume.nii.gz
On 1/12/2023 9:12 PM, Shao-Min (Sean) Hung wrote:
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Sure.
Here's the command line:
--
mri_label2vol --label
/Users/xxx/Documents/MRI/UNSTP/data/$subj/bold/Ret
External Email - Use Caution
Hi Doug,
That solved the problem like a charm. By the way, the volume came from
brain.mgz.
Thank you!
Regards,
Sean
On Sat, Jan 14, 2023 at 12:28 AM Douglas N. Greve
wrote:
> What volume did the TF.label come from? Whatever it is, try adding
> --tk
Hello FreeSurfer Developers,
I’m attempting to convert a dlabel file from the Human Connectome Project to a
volumetric ROI that I can use for fiber tractography on other platforms. I
followed the tutorial provided by HCP (hcp-users FAQ #9: How do I map data
between FreeSurfer ... - HCP
Wiki
Hi Joshua
hmmm, label2vol takes our text label file format as input, not a .gii
file. You probably need to ask the Wash U HCP folks how to do this
conversion as I believe there should be a step before label2vol
cheers
Bruce
On Thu, 9 Mar 2017,
Burks, Joshua D (HSC) wrote:
Hello FreeSurf