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Dear freesurfer experts,
I want to create an annot from the output of PALM, the vertexwise file
corrected by TFCE-FWEp. The values of this files are in 'p-values'.
However, the mri_surfcluster has some problems: it could not recognize the
fsaverage an
running freesurfer-v3.0
SUBJECTS_DIR=/home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell
glm is at /home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell
and contains
age.mat lh.sickle.glmdir mris_preproc.surface.lh.log
rh.sickle.thickness.10.mgh
FSGDstudy.txt lh.sickle.thicknes
The "locale" error is probably not a problem. Does
/media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white exist? What operating
system are you using?
On 4/24/2019 6:41 AM, Javier Navas wrote:
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Dear freesurfer experts,
I want to create an annot from the out
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Yes, the file ($SUBJECTS_DIR/fsaverage/surf/rh.white) exists and I can open
it with freeview. The mri_surfcluster worked well in the past. However, I
recently downloaded the fspalm and the mri_surfcluster attached for the
fspalm. I do not know if it cou
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Hi Sir/Madam:
I got an error when executing the new version "mri_glmfit-sim" correction for
multiple comparisons with permutation at the group level according to
FsFastTutorialV6.0.
This was the command I used: "mri_glmfit-sim --glmdir my-glm --p
You need to tell it the subject with --subject
On Tue, 10 Apr 2007, Kirk, Gregory wrote:
running freesurfer-v3.0
SUBJECTS_DIR=/home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell
glm is at /home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell
and contains
age.mat lh.sickle.g
Did you create the "my-glm" folder? If so, what was your command? Can
you send a link to the exact wiki page?
On 11/6/19 2:49 AM, 王如雪 wrote:
>
> External Email - Use Caution
>
>
> Hi Sir/Madam:
>
> I got an error when executing the new version "mri_glmfit-sim"
> correction for multiple c
