Sent: Thursday, April 11, 2024 16:21
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_synthmorph
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Hi,
I am developping a Nextflow DSL2 module through nf-core for registration using
mri_synthmorph, through the dockerised version:
MailScanner has
From: John Anderson
Sent: Friday, September 1, 2023 13:43
To: Freesurfer support list; Hoffmann, Malte,PhD
Subject: Re: [Freesurfer] mri_synthmorph
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Dear Malte
Thank you so much. I've tried both rigid and affine
> From: freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Anderson <
> jb19790...@gmail.com>
> Sent: Friday, September 1, 2023 12:45
> To: Freesurfer support list
> Subject: [Frees
ii.gz
Cheers,
Malte
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of John Anderson
Sent: Friday, September 1, 2023 12:45
To: Freesurfer support list
Subject: [Freesurfer] mri_synthmorph
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Dear Freesurfer experts,
I processed DTI data using dt_recon, an
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Dear Freesurfer experts,
I processed DTI data using dt_recon, and I want to register FA images to
the standard MNI152 space. However, after running the command
mri_synthmorph fa.nii.gz template.nii.gz -o fa_in_MNI.nii.gz,
the registration is not
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try fixing your qform first
On 5/15/2023 3:28 PM, Nadia Kane wrote:
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Hi,
I tried using mri_synthmorph in FreeSurfer on synthetic mouse brain
data, but my output moved image is just black pixels.
Thanks,
Nadia
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Hi,
I tried using mri_synthmorph in FreeSurfer on synthetic mouse brain data,
but my output moved image is just black pixels.
Thanks,
Nadia
Nadia Kane
Junior Imaging Specialist
University Imaging Centers | University of Minnesota
