Re: [Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Bruce Fischl
t all.   From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Rouhollah Abdollahi Sent: 15 August 2011 18:15 To: Ahmed, F, Me Cc: freesurfer@nmr.mgh.harvard.edu; Louis Nicholas Vinke Subject: Re: [Freesurfer] recon-all error with nu_correct   check

Re: [Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Ahmed, F, Me
Sent: 15 August 2011 18:15 To: Ahmed, F, Me Cc: freesurfer@nmr.mgh.harvard.edu; Louis Nicholas Vinke Subject: Re: [Freesurfer] recon-all error with nu_correct check this!!! /bin/mv: cannot move `./tmp.mri_nu_correct.mni.26621/1/nu2_residue.mnc' to `./ tmp.mri_nu_correct.mni.26621/1/n

Re: [Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Rouhollah Abdollahi
mailto: > freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Louis Nicholas Vinke > Sent: 15 August 2011 17:59 > To: Ahmed, F, Me > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] recon-all error with nu_correct > > Hi Fatima, > What is the recon-all command line

Re: [Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Ahmed, F, Me
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Louis Nicholas Vinke Sent: 15 August 2011 17:59 To: Ahmed, F, Me Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all error with nu_correct Hi Fatima, What is the recon-all command line you are using to start the recon? -Louis

Re: [Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Louis Nicholas Vinke
Hi Fatima, What is the recon-all command line you are using to start the recon? -Louis On Mon, 15 Aug 2011, Ahmed, F, Me wrote: > Hello Freesurfer experts, > > I am having great difficulty in trying to run the recon-all process on some > scans of mine. I have tried running it a number of times,

[Freesurfer] recon-all error with nu_correct

2011-08-15 Thread Ahmed, F, Me
Hello Freesurfer experts, I am having great difficulty in trying to run the recon-all process on some scans of mine. I have tried running it a number of times, to no avail and the error I have gotten most recently is the nu_correct error. I have attached the log for this recon-all and hope some